Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IP585_RS24260 Genome accession   NZ_CP063454
Coordinates   5345308..5345853 (-) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida strain PC-578038     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5340308..5350853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP585_RS24245 - 5342068..5342829 (-) 762 WP_019439165.1 SDR family NAD(P)-dependent oxidoreductase -
  IP585_RS24250 - 5342851..5343636 (-) 786 WP_019439164.1 sulfite exporter TauE/SafE family protein -
  IP585_RS24255 - 5343837..5345219 (+) 1383 WP_267273462.1 PLP-dependent aminotransferase family protein -
  IP585_RS24260 ssb 5345308..5345853 (-) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  IP585_RS24265 - 5345863..5347257 (-) 1395 WP_014589479.1 MFS transporter -
  IP585_RS24270 uvrA 5347387..5350221 (+) 2835 WP_267273463.1 excinuclease ABC subunit UvrA -
  IP585_RS24275 bfr 5350294..5350758 (-) 465 WP_003255449.1 bacterioferritin -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=495703 IP585_RS24260 WP_003255446.1 5345308..5345853(-) (ssb) [Pseudomonas putida strain PC-578038]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=495703 IP585_RS24260 WP_003255446.1 5345308..5345853(-) (ssb) [Pseudomonas putida strain PC-578038]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAATCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCGTACAATCAGGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492