Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IP582_RS01700 Genome accession   NZ_CP063427
Coordinates   361853..362389 (+) Length   178 a.a.
NCBI ID   WP_039077898.1    Uniprot ID   -
Organism   Citrobacter sp. BDA59-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 356853..367389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP582_RS01680 (IP582_01680) aphA 357165..357869 (+) 705 WP_193794901.1 acid phosphatase AphA -
  IP582_RS01685 (IP582_01685) - 357973..358389 (+) 417 WP_039077901.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IP582_RS01690 (IP582_01690) - 358392..358760 (+) 369 WP_193794902.1 MmcQ/YjbR family DNA-binding protein -
  IP582_RS01695 (IP582_01695) uvrA 358775..361600 (-) 2826 WP_193794903.1 excinuclease ABC subunit UvrA -
  IP582_RS01700 (IP582_01700) ssb 361853..362389 (+) 537 WP_039077898.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IP582_RS01705 (IP582_01705) - 362563..362844 (-) 282 WP_039077897.1 YjcB family protein -
  IP582_RS01710 (IP582_01710) - 363400..364803 (+) 1404 WP_193796166.1 sensor domain-containing diguanylate cyclase -
  IP582_RS01715 (IP582_01715) - 365144..366715 (+) 1572 WP_193794904.1 EAL domain-containing protein -
  IP582_RS01720 (IP582_01720) soxS 366731..367054 (-) 324 WP_039077894.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18881.93 Da        Isoelectric Point: 5.2456

>NTDB_id=495603 IP582_RS01700 WP_039077898.1 361853..362389(+) (ssb) [Citrobacter sp. BDA59-3]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQGQQGGWGQPQQPQGGNQFSGGAQSRPQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=495603 IP582_RS01700 WP_039077898.1 361853..362389(+) (ssb) [Citrobacter sp. BDA59-3]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCGACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTACATT
GAGGGTCAACTGCGTACCCGCAAGTGGACCGATCAGTCCGGCGCCGAGAAATACACCACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGTGGCCGTCAGGGTGGCGGTGCTCCGGCTGGCGGCAATATGGGCGGCGGCCAGGGCCAGC
AGGGCGGTTGGGGCCAACCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAATCTCGCCCACAGCAGTCT
GCGCCGGCACCGTCTAACGAACCGCCGATGGACTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.758
  ssb Glaesserella parasuis strain SC1401

56.383

100

0.596
  ssb Neisseria meningitidis MC58

46.154

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.472