Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   INP70_RS08350 Genome accession   NZ_CP063420
Coordinates   1853412..1853999 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain VC_hf7     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848412..1858999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS08330 - 1848640..1849905 (-) 1266 WP_000835928.1 YdgA family protein -
  INP70_RS08335 - 1850128..1852083 (+) 1956 WP_001082996.1 ATP-binding protein -
  INP70_RS08340 - 1852080..1852577 (+) 498 WP_001031964.1 response regulator -
  INP70_RS08345 - 1852768..1853316 (+) 549 WP_001232640.1 hypothetical protein -
  INP70_RS08350 tfoX 1853412..1853999 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  INP70_RS08355 - 1854429..1855349 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  INP70_RS08360 - 1855370..1856275 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  INP70_RS08365 - 1856465..1856974 (+) 510 WP_000826868.1 hypothetical protein -
  INP70_RS08370 panP 1857084..1858730 (+) 1647 WP_000253190.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=495527 INP70_RS08350 WP_001005366.1 1853412..1853999(-) (tfoX) [Vibrio cholerae strain VC_hf7]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=495527 INP70_RS08350 WP_001005366.1 1853412..1853999(-) (tfoX) [Vibrio cholerae strain VC_hf7]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAGCAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCTAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.