Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IM737_RS01430 Genome accession   NZ_CP063401
Coordinates   295066..295596 (+) Length   176 a.a.
NCBI ID   WP_236897767.1    Uniprot ID   -
Organism   Devosia sp. SL43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 290066..300596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM737_RS01415 (IM737_01420) - 290273..290425 (-) 153 WP_236897763.1 hypothetical protein -
  IM737_RS01420 (IM737_01425) uvrA 290983..293880 (-) 2898 WP_236897765.1 excinuclease ABC subunit UvrA -
  IM737_RS01425 (IM737_01430) - 294100..294744 (-) 645 WP_236897766.1 LysE family translocator -
  IM737_RS01430 (IM737_01435) ssb 295066..295596 (+) 531 WP_236897767.1 single-stranded DNA-binding protein Machinery gene
  IM737_RS01435 (IM737_01440) - 295782..296819 (-) 1038 WP_236897768.1 GGDEF domain-containing protein -
  IM737_RS01440 (IM737_01445) - 297235..297762 (-) 528 WP_236897769.1 hypothetical protein -
  IM737_RS01445 (IM737_01450) - 297943..300342 (-) 2400 WP_236897770.1 efflux RND transporter permease subunit -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18615.44 Da        Isoelectric Point: 5.9652

>NTDB_id=495444 IM737_RS01430 WP_236897767.1 295066..295596(+) (ssb) [Devosia sp. SL43]
MAGSVNKVILVGNLGADPEVRNLPSGGKVVNLSIATSENWKDKNTGERREKTEWHRVVIFSEGLARVAESYLKKGSKVYL
EGQLQTRKWQDQSGQDKYSTEIVLQGFNSNMTLLDGRGEGQGGGDSDGGFRGVDNGGGGGFRGARDNGGGGNGGGQRPRA
NAPAFEPGGMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=495444 IM737_RS01430 WP_236897767.1 295066..295596(+) (ssb) [Devosia sp. SL43]
ATGGCAGGCAGTGTGAACAAGGTCATCCTGGTGGGCAATCTCGGGGCTGATCCCGAAGTGCGCAACCTTCCCAGCGGCGG
CAAGGTGGTCAATCTCTCGATCGCCACCTCCGAAAACTGGAAAGACAAGAATACCGGCGAGCGCCGTGAAAAGACCGAGT
GGCACCGTGTGGTGATCTTCTCGGAAGGGCTGGCACGGGTGGCCGAAAGCTATCTCAAGAAAGGTAGCAAGGTTTATCTG
GAAGGGCAGTTGCAGACGCGCAAATGGCAGGATCAGTCCGGCCAGGACAAATACTCTACCGAGATCGTCCTGCAGGGGTT
CAACTCCAACATGACGCTGCTCGACGGTCGCGGCGAGGGGCAGGGCGGCGGCGATAGCGACGGCGGCTTCCGCGGTGTCG
ATAATGGCGGTGGCGGCGGTTTCCGCGGCGCTCGCGACAATGGCGGTGGCGGCAATGGCGGCGGCCAGCGTCCCCGCGCC
AACGCCCCGGCCTTCGAGCCCGGCGGCATGGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.105

100

0.562
  ssb Vibrio cholerae strain A1552

55.367

100

0.557
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.426
  ssb Neisseria meningitidis MC58

41.341

100

0.42