Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IM739_RS12580 Genome accession   NZ_CP063397
Coordinates   2660114..2660638 (+) Length   174 a.a.
NCBI ID   WP_237368070.1    Uniprot ID   -
Organism   Rhizobium sp. SL42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2655114..2665638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM739_RS12565 (IM739_12525) - 2655528..2656337 (-) 810 WP_237368067.1 DUF72 domain-containing protein -
  IM739_RS12570 (IM739_12530) - 2656334..2656600 (-) 267 WP_237368068.1 hypothetical protein -
  IM739_RS12575 (IM739_12535) uvrA 2656920..2659841 (-) 2922 WP_237368069.1 excinuclease ABC subunit UvrA -
  IM739_RS12580 (IM739_12540) ssb 2660114..2660638 (+) 525 WP_237368070.1 single-stranded DNA-binding protein Machinery gene
  IM739_RS12585 (IM739_12545) - 2660810..2661766 (-) 957 WP_237368071.1 homocysteine S-methyltransferase family protein -
  IM739_RS12590 (IM739_12550) - 2661992..2662618 (+) 627 WP_237368072.1 TetR/AcrR family transcriptional regulator -
  IM739_RS12595 (IM739_12555) - 2662627..2663256 (-) 630 WP_237368073.1 MarC family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18407.17 Da        Isoelectric Point: 5.9441

>NTDB_id=495423 IM739_RS12580 WP_237368070.1 2660114..2660638(+) (ssb) [Rhizobium sp. SL42]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVIFNEGLCKVAEQYLKKGSTVYI
EGALQTRKWQDQSGQDRYSTEVVLQGFNSTLTMLGGRGDGGGASRGGDFGGAGGGYDDYGSAPASSAPRGGSAGRGSSAP
SGGFSRDLDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=495423 IM739_RS12580 WP_237368070.1 2660114..2660638(+) (ssb) [Rhizobium sp. SL42]
ATGGCTGGTAGCGTCAACAAGGTCATCCTGATCGGCAATCTCGGCGCCGATCCTGAAATCCGCCGGACCCAGGACGGCCG
GCCGATTGCCAACCTGCGGATTGCCACATCGGAAACATGGCGCGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAAT
GGCACACGGTCGTCATCTTCAACGAAGGCCTTTGCAAGGTTGCCGAGCAGTATCTGAAGAAGGGCTCCACGGTCTATATC
GAGGGCGCGCTGCAGACCCGCAAGTGGCAGGACCAGAGCGGTCAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGATT
CAACTCGACCCTGACAATGCTGGGAGGTCGTGGCGATGGCGGCGGCGCATCGCGTGGCGGTGACTTCGGCGGCGCAGGCG
GTGGTTATGACGACTACGGTTCTGCTCCGGCTTCCTCCGCTCCGCGCGGCGGCTCGGCGGGTCGTGGGTCCAGCGCACCG
TCGGGCGGCTTCTCGCGCGATCTGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.913

99.425

0.546
  ssb Glaesserella parasuis strain SC1401

45.876

100

0.511
  ssb Neisseria meningitidis MC58

42.458

100

0.437
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.431