Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KIM08_RS01800 Genome accession   NZ_CP074914
Coordinates   390557..391093 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 08_3323     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 385557..396093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM08_RS01780 (KIM08_01770) aphA 385846..386559 (+) 714 WP_001375558.1 acid phosphatase AphA -
  KIM08_RS01785 (KIM08_01775) yjbQ 386670..387086 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KIM08_RS01790 (KIM08_01780) yjbR 387090..387446 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KIM08_RS01795 (KIM08_01785) uvrA 387481..390303 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  KIM08_RS01800 (KIM08_01790) ssb 390557..391093 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KIM08_RS01805 (KIM08_01795) yjcB 391192..391473 (-) 282 WP_001341690.1 YjcB family protein -
  KIM08_RS01810 (KIM08_01800) pdeC 391903..393489 (+) 1587 WP_000019526.1 c-di-GMP phosphodiesterase PdeC -
  KIM08_RS01815 (KIM08_01805) soxS 393492..393815 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KIM08_RS01820 (KIM08_01810) soxR 393901..394365 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=495262 KIM08_RS01800 WP_000168305.1 390557..391093(+) (ssb) [Escherichia coli strain 08_3323]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=495262 KIM08_RS01800 WP_000168305.1 390557..391093(+) (ssb) [Escherichia coli strain 08_3323]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489