Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KIM09_RS01710 Genome accession   NZ_CP074911
Coordinates   374751..375287 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 08_3418     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 369751..380287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM09_RS01690 (KIM09_01680) aphA 370040..370753 (+) 714 WP_001375558.1 acid phosphatase AphA -
  KIM09_RS01695 (KIM09_01685) yjbQ 370864..371280 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KIM09_RS01700 (KIM09_01690) yjbR 371284..371640 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KIM09_RS01705 (KIM09_01695) uvrA 371675..374497 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  KIM09_RS01710 (KIM09_01700) ssb 374751..375287 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KIM09_RS01715 (KIM09_01705) yjcB 375386..375667 (-) 282 WP_001341690.1 YjcB family protein -
  KIM09_RS01720 (KIM09_01710) pdeC 376097..377683 (+) 1587 WP_032345159.1 c-di-GMP phosphodiesterase PdeC -
  KIM09_RS01725 (KIM09_01715) soxS 377686..378009 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KIM09_RS01730 (KIM09_01720) soxR 378095..378559 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=495183 KIM09_RS01710 WP_000168305.1 374751..375287(+) (ssb) [Escherichia coli strain 08_3418]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=495183 KIM09_RS01710 WP_000168305.1 374751..375287(+) (ssb) [Escherichia coli strain 08_3418]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489