Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SALIVA_RS09230 Genome accession   NC_017595
Coordinates   2030758..2032728 (-) Length   656 a.a.
NCBI ID   WP_014635090.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2025758..2037728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS09215 (SALIVA_1886) - 2026360..2027250 (-) 891 WP_014635088.1 hypothetical protein -
  SALIVA_RS09220 (SALIVA_1887) - 2027310..2028266 (-) 957 WP_223297866.1 GHKL domain-containing protein -
  SALIVA_RS09225 (SALIVA_1888) gltX 2029068..2030522 (-) 1455 WP_014635089.1 glutamate--tRNA ligase -
  SALIVA_RS09230 (SALIVA_1889) amiA 2030758..2032728 (-) 1971 WP_014635090.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVA_RS09235 (SALIVA_1890) rplA 2032908..2033597 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  SALIVA_RS09240 (SALIVA_1891) rplK 2033697..2034122 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  SALIVA_RS09245 (SALIVA_1892) - 2034294..2034647 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  SALIVA_RS09250 (SALIVA_1893) - 2034743..2035240 (-) 498 WP_014635091.1 carbonic anhydrase -
  SALIVA_RS09255 (SALIVA_1894) - 2035391..2036086 (-) 696 WP_014635092.1 TIGR00266 family protein -
  SALIVA_RS09260 (SALIVA_1895) radA 2036173..2037534 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 73004.82 Da        Isoelectric Point: 4.9084

>NTDB_id=49490 SALIVA_RS09230 WP_014635090.1 2030758..2032728(-) (amiA) [Streptococcus salivarius JIM8777]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPINEDFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGVNIDRQTYDHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNGENTKSFMGYDNPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKEK
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=49490 SALIVA_RS09230 WP_014635090.1 2030758..2032728(-) (amiA) [Streptococcus salivarius JIM8777]
ATGAAAAAGAGTAAGGTATTTTTACTAGCAGCCGTAGGCCTATTATCTGTAGGTGTTTTAACGGCTTGCTCATCATCAAG
TAAGACATCTGGTAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ACATGACGACAGCCGTTAGTAACGGTGTTGATGGTCTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACCTATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
CGAAGAGTATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCTGTTAAGGGCTTGAATGATTACCTGTCAGGTGCCAACAAGGACTTCTCAAATGTAGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGTCAACCAGAACCTTACTGGAATTCAAAATTGACCTACTCAGTTAC
TTGGCCTATTAATGAAGATTTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATATCTTCTTAAATCTTTGACAACGAAATCTTCTATTGAGTTCACCAAGAATGAAAACTACTGGGATAAGGAT
AATGTCTATTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACTGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGCTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTGTTAATATCGATCGTCAAACTTATGACCATACATCTAAAGAAAAT
GATCAACAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCCATTGACCGTAC
AAATTACGCCGCACAACTTAACGGTAAGGAAGGTGGAAGCACTGCCGTTCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGACGGTCTTTATAACCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCATCAATTGTCAACTGATGATTTCTATAAC
ATTACCTACTCTGCATCAAATGCAGCGGCAGAGGATTGGGACTTGTCAGTAGGTGTGGCTTGGGAGCCTGACTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATGGTGAAAATACTAAATCTTTCATGGGTTATGACAATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCCGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTGACTAAGAAACAATATGATTCAGCTTATAAAGATTGGCTTAAAGAAAAA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.97

100

0.7
  amiA3 Streptococcus thermophilus LMD-9

68.189

100

0.683
  amiA3 Streptococcus thermophilus LMG 18311

67.428

100

0.675

Multiple sequence alignment