Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SALIVA_RS09260 Genome accession   NC_017595
Coordinates   2036173..2037534 (-) Length   453 a.a.
NCBI ID   WP_072903619.1    Uniprot ID   A0A1V0HAK4
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2031173..2042534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS09235 (SALIVA_1890) rplA 2032908..2033597 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  SALIVA_RS09240 (SALIVA_1891) rplK 2033697..2034122 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  SALIVA_RS09245 (SALIVA_1892) - 2034294..2034647 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  SALIVA_RS09250 (SALIVA_1893) - 2034743..2035240 (-) 498 WP_014635091.1 carbonic anhydrase -
  SALIVA_RS09255 (SALIVA_1894) - 2035391..2036086 (-) 696 WP_014635092.1 TIGR00266 family protein -
  SALIVA_RS09260 (SALIVA_1895) radA 2036173..2037534 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene
  SALIVA_RS09265 (SALIVA_1896) - 2037531..2037998 (-) 468 WP_041826756.1 isochorismatase family cysteine hydrolase -
  SALIVA_RS09270 (SALIVA_1897) - 2038009..2038455 (-) 447 WP_014635094.1 dUTP diphosphatase -
  SALIVA_RS09275 (SALIVA_1898) - 2038664..2039266 (+) 603 WP_014635095.1 NADPH-dependent FMN reductase -
  SALIVA_RS09280 (SALIVA_1899) - 2039285..2040532 (+) 1248 WP_003092053.1 NAD(P)H-dependent oxidoreductase -
  SALIVA_RS09285 (SALIVA_1900) - 2040649..2041440 (+) 792 WP_014635096.1 formate/nitrite transporter family protein -
  SALIVA_RS09290 (SALIVA_1901) - 2041449..2042009 (+) 561 WP_014635097.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49449.83 Da        Isoelectric Point: 6.6528

>NTDB_id=49491 SALIVA_RS09260 WP_072903619.1 2036173..2037534(-) (radA) [Streptococcus salivarius JIM8777]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=49491 SALIVA_RS09260 WP_072903619.1 2036173..2037534(-) (radA) [Streptococcus salivarius JIM8777]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGCCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTGAAAAATGCTCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
CTAGGTGGCGGTGTGGTTCCGGGTAGCCTGGTTCTTATTGGAGGAGATCCAGGTATAGGGAAATCGACTCTCCTCTTACA
GGTGTCAACACAGTTAGCTAACAAGGGAACTGTCCTCTATGTATCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTAGAG
GCTATAAAACCCGATTTTCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTTATGCAGATTGCCAAAACCAATAACATCGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAACTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGAGAACGT
CATCATACCTTCCGTATTTTGCGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAAGTTTTCTTAGAGGAACGCTTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCAGGTGGTGTCAAATTGGACGAGCCTGCTATTGACCTTGCTGTCGCTGTTGCGA
TTGCCTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGCTCCCAAAAATTCTCT
GCACGGCATGAAAATTCCAGAAGGTATCCAGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0HAK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment