Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EKR40_RS00255 Genome accession   NZ_CP063381
Coordinates   54042..54578 (+) Length   178 a.a.
NCBI ID   WP_003721668.1    Uniprot ID   A0A0E0USV6
Organism   Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 49042..59578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKR40_RS00230 (EKR40_00230) aguA 49433..50542 (+) 1110 WP_009911777.1 agmatine deiminase -
  EKR40_RS00235 (EKR40_00235) - 50559..51338 (+) 780 WP_003721664.1 MurR/RpiR family transcriptional regulator -
  EKR40_RS00240 (EKR40_00240) - 51443..52102 (+) 660 WP_003721665.1 DedA family protein -
  EKR40_RS00245 (EKR40_00245) arcA 52182..53414 (+) 1233 WP_010989328.1 arginine deiminase -
  EKR40_RS00250 (EKR40_00250) rpsF 53693..53986 (+) 294 WP_003721667.1 30S ribosomal protein S6 -
  EKR40_RS00255 (EKR40_00255) ssbA 54042..54578 (+) 537 WP_003721668.1 single-stranded DNA-binding protein Machinery gene
  EKR40_RS00260 (EKR40_00260) rpsR 54622..54861 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  EKR40_RS00265 (EKR40_00265) - 55015..55626 (+) 612 WP_009924128.1 PepSY domain-containing protein -
  EKR40_RS00270 (EKR40_00270) - 55883..56497 (+) 615 WP_003727551.1 accessory gene regulator ArgB-like protein -
  EKR40_RS00275 (EKR40_00275) - 56481..56642 (+) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  EKR40_RS00280 (EKR40_00280) - 56738..58033 (+) 1296 WP_025370521.1 sensor histidine kinase -
  EKR40_RS00285 (EKR40_00285) - 58052..58780 (+) 729 WP_003721674.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19493.14 Da        Isoelectric Point: 4.7306

>NTDB_id=494884 EKR40_RS00255 WP_003721668.1 54042..54578(+) (ssbA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
PFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=494884 EKR40_RS00255 WP_003721668.1 54042..54578(+) (ssbA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCGGGCGTTGATGGCCGTGTTCAAACTCGT
AATTACGAGGGAAACGATGGTAAACGTGTTTATGTGACTGAAATTGTAGCAGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAAGTGGCAATAACAACAATAATTACAATAGCGGTGGAAATAACTTCGGAC
AAGCACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAATAATGAT
CCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.539

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.556
  ssb Glaesserella parasuis strain SC1401

35.484

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.551

0.365