Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IMY97_RS05055 Genome accession   NZ_CP063380
Coordinates   1123321..1123866 (-) Length   181 a.a.
NCBI ID   WP_103942327.1    Uniprot ID   -
Organism   Pectobacterium versatile strain ECC15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1118321..1128866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY97_RS05050 (IMY97_05075) - 1122390..1122671 (-) 282 WP_103861804.1 hypothetical protein -
  IMY97_RS05055 (IMY97_05080) ssb 1123321..1123866 (-) 546 WP_103942327.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IMY97_RS05060 (IMY97_05085) uvrA 1124117..1126951 (+) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  IMY97_RS05065 (IMY97_05090) - 1126967..1127386 (+) 420 WP_039541310.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19175.13 Da        Isoelectric Point: 5.2456

>NTDB_id=494869 IMY97_RS05055 WP_103942327.1 1123321..1123866(-) (ssb) [Pectobacterium versatile strain ECC15]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQSGGAPAGGGSAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=494869 IMY97_RS05055 WP_103942327.1 1123321..1123866(-) (ssb) [Pectobacterium versatile strain ECC15]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTAGTTGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGAGCGGCGGCGCACCAGCAGGCGGTGGCAGTGCAGGTGGCGGCCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCGGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.597
  ssb Neisseria meningitidis MC58

46.927

98.895

0.464
  ssb Neisseria gonorrhoeae MS11

46.927

98.895

0.464