Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SALIVA_RS07935 Genome accession   NC_017595
Coordinates   1767051..1767746 (-) Length   231 a.a.
NCBI ID   WP_014634898.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1762051..1772746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS07920 (SALIVA_1615) - 1762862..1763407 (-) 546 WP_014634895.1 GNAT family N-acetyltransferase -
  SALIVA_RS07925 (SALIVA_1616) - 1763473..1764735 (-) 1263 WP_014634896.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SALIVA_RS07930 (SALIVA_1617) comEC/celB 1764821..1767061 (-) 2241 WP_014634897.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SALIVA_RS07935 (SALIVA_1618) comEA 1767051..1767746 (-) 696 WP_014634898.1 helix-hairpin-helix domain-containing protein Machinery gene
  SALIVA_RS07940 (SALIVA_1619) - 1767854..1768609 (-) 756 WP_002948862.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  SALIVA_RS07945 (SALIVA_1620) - 1768739..1769686 (+) 948 WP_014634899.1 polysaccharide deacetylase family protein -
  SALIVA_RS07950 (SALIVA_1621) - 1769736..1770500 (+) 765 WP_014634900.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SALIVA_RS07955 (SALIVA_1622) - 1770504..1770773 (+) 270 WP_014634901.1 GIY-YIG nuclease family protein -
  SALIVA_RS07960 (SALIVA_1623) - 1770983..1771798 (+) 816 WP_014634902.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24545.60 Da        Isoelectric Point: 4.8571

>NTDB_id=49483 SALIVA_RS07935 WP_014634898.1 1767051..1767746(-) (comEA) [Streptococcus salivarius JIM8777]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKQGSKSLTEVSSQSKTEESEKDK
SKVTVDVKGAVVKPGVYTLKAGTRVTDAIKAAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTSQVSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESIYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=49483 SALIVA_RS07935 WP_014634898.1 1767051..1767746(-) (comEA) [Streptococcus salivarius JIM8777]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTTTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAACAAGGGTCAAAATCACTTACTGAAGTGTCTTCTCAGTCAAAGACTGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAAGGAGCCGTAGTCAAGCCAGGGGTTTATACGCTAAAAGCAGGCACTAGAGTGACTGA
CGCCATCAAAGCCGCTGGGGGAATGACCGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTGGCAACTAAGGATGAAAACCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGTGTCTGACAAAGGA
GGGCAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACGTTAGATAAAATCAGAGAGTCCATCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(168-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

89.61

100

0.896
  comEA/celA/cilE Streptococcus mitis SK321

40.87

99.567

0.407
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40.611

99.134

0.403
  comEA Latilactobacillus sakei subsp. sakei 23K

35.27

100

0.368

Multiple sequence alignment