Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   INQ56_RS11545 Genome accession   NZ_CP063360
Coordinates   2251981..2252274 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain BIM B-263     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2246981..2257274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS11500 (INQ56_11500) sinR 2247145..2247480 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  INQ56_RS11505 (INQ56_11505) tasA 2247548..2248348 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  INQ56_RS11510 (INQ56_11510) sipW 2248407..2248979 (-) 573 WP_017357979.1 signal peptidase I SipW -
  INQ56_RS11515 (INQ56_11515) tapA 2249029..2249556 (-) 528 WP_041506960.1 amyloid fiber anchoring/assembly protein TapA -
  INQ56_RS11520 (INQ56_11520) - 2249809..2250135 (+) 327 WP_041506959.1 DUF3889 domain-containing protein -
  INQ56_RS11525 (INQ56_11525) - 2250170..2250364 (-) 195 WP_008342191.1 YqzE family protein -
  INQ56_RS11530 (INQ56_11530) - 2250425..2250808 (-) 384 WP_041506958.1 competence type IV pilus minor pilin ComGG -
  INQ56_RS11535 (INQ56_11535) comGF 2250805..2251302 (-) 498 WP_056705248.1 competence type IV pilus minor pilin ComGF -
  INQ56_RS19460 comGE 2251244..2251558 (-) 315 WP_056705249.1 competence type IV pilus minor pilin ComGE -
  INQ56_RS11540 (INQ56_11540) comGD 2251542..2251988 (-) 447 WP_061419584.1 competence type IV pilus minor pilin ComGD -
  INQ56_RS11545 (INQ56_11545) comGC 2251981..2252274 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  INQ56_RS11550 (INQ56_11550) comGB 2252291..2253331 (-) 1041 WP_073413946.1 competence type IV pilus assembly protein ComGB -
  INQ56_RS11555 (INQ56_11555) comGA 2253312..2254382 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  INQ56_RS11560 (INQ56_11560) - 2254839..2255711 (-) 873 WP_041506953.1 STAS domain-containing protein -
  INQ56_RS11570 (INQ56_11570) - 2255936..2256316 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  INQ56_RS11575 (INQ56_11575) - 2256529..2256771 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=494699 INQ56_RS11545 WP_008342186.1 2251981..2252274(-) (comGC) [Bacillus altitudinis strain BIM B-263]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=494699 INQ56_RS11545 WP_008342186.1 2251981..2252274(-) (comGC) [Bacillus altitudinis strain BIM B-263]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATTACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAATGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392