Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   INQ56_RS11555 Genome accession   NZ_CP063360
Coordinates   2253312..2254382 (-) Length   356 a.a.
NCBI ID   WP_017357987.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BIM B-263     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2248312..2259382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS11510 (INQ56_11510) sipW 2248407..2248979 (-) 573 WP_017357979.1 signal peptidase I SipW -
  INQ56_RS11515 (INQ56_11515) tapA 2249029..2249556 (-) 528 WP_041506960.1 amyloid fiber anchoring/assembly protein TapA -
  INQ56_RS11520 (INQ56_11520) - 2249809..2250135 (+) 327 WP_041506959.1 DUF3889 domain-containing protein -
  INQ56_RS11525 (INQ56_11525) - 2250170..2250364 (-) 195 WP_008342191.1 YqzE family protein -
  INQ56_RS11530 (INQ56_11530) - 2250425..2250808 (-) 384 WP_041506958.1 competence type IV pilus minor pilin ComGG -
  INQ56_RS11535 (INQ56_11535) comGF 2250805..2251302 (-) 498 WP_056705248.1 competence type IV pilus minor pilin ComGF -
  INQ56_RS19460 comGE 2251244..2251558 (-) 315 WP_056705249.1 competence type IV pilus minor pilin ComGE -
  INQ56_RS11540 (INQ56_11540) comGD 2251542..2251988 (-) 447 WP_061419584.1 competence type IV pilus minor pilin ComGD -
  INQ56_RS11545 (INQ56_11545) comGC 2251981..2252274 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  INQ56_RS11550 (INQ56_11550) comGB 2252291..2253331 (-) 1041 WP_073413946.1 competence type IV pilus assembly protein ComGB -
  INQ56_RS11555 (INQ56_11555) comGA 2253312..2254382 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  INQ56_RS11560 (INQ56_11560) - 2254839..2255711 (-) 873 WP_041506953.1 STAS domain-containing protein -
  INQ56_RS11570 (INQ56_11570) - 2255936..2256316 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  INQ56_RS11575 (INQ56_11575) - 2256529..2256771 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  INQ56_RS11580 (INQ56_11580) - 2256820..2257458 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  INQ56_RS11585 (INQ56_11585) - 2257619..2257792 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  INQ56_RS11590 (INQ56_11590) - 2257817..2258131 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40339.70 Da        Isoelectric Point: 9.0449

>NTDB_id=494700 INQ56_RS11555 WP_017357987.1 2253312..2254382(-) (comGA) [Bacillus altitudinis strain BIM B-263]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=494700 INQ56_RS11555 WP_017357987.1 2253312..2254382(-) (comGA) [Bacillus altitudinis strain BIM B-263]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCAGAAACAGCGAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGATGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

65.254

99.438

0.649