Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   INQ56_RS11500 Genome accession   NZ_CP063360
Coordinates   2247145..2247480 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BIM B-263     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2242145..2252480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS11480 (INQ56_11480) gcvT 2242621..2243718 (-) 1098 WP_073413953.1 glycine cleavage system aminomethyltransferase GcvT -
  INQ56_RS11485 (INQ56_11485) - 2244280..2245950 (+) 1671 WP_008342199.1 DEAD/DEAH box helicase -
  INQ56_RS11490 (INQ56_11490) - 2245965..2246762 (+) 798 WP_017367588.1 YqhG family protein -
  INQ56_RS11495 (INQ56_11495) - 2246947..2247111 (+) 165 WP_082055572.1 anti-repressor SinI family protein -
  INQ56_RS11500 (INQ56_11500) sinR 2247145..2247480 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  INQ56_RS11505 (INQ56_11505) tasA 2247548..2248348 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  INQ56_RS11510 (INQ56_11510) sipW 2248407..2248979 (-) 573 WP_017357979.1 signal peptidase I SipW -
  INQ56_RS11515 (INQ56_11515) tapA 2249029..2249556 (-) 528 WP_041506960.1 amyloid fiber anchoring/assembly protein TapA -
  INQ56_RS11520 (INQ56_11520) - 2249809..2250135 (+) 327 WP_041506959.1 DUF3889 domain-containing protein -
  INQ56_RS11525 (INQ56_11525) - 2250170..2250364 (-) 195 WP_008342191.1 YqzE family protein -
  INQ56_RS11530 (INQ56_11530) - 2250425..2250808 (-) 384 WP_041506958.1 competence type IV pilus minor pilin ComGG -
  INQ56_RS11535 (INQ56_11535) comGF 2250805..2251302 (-) 498 WP_056705248.1 competence type IV pilus minor pilin ComGF -
  INQ56_RS19460 comGE 2251244..2251558 (-) 315 WP_056705249.1 competence type IV pilus minor pilin ComGE -
  INQ56_RS11540 (INQ56_11540) comGD 2251542..2251988 (-) 447 WP_061419584.1 competence type IV pilus minor pilin ComGD -
  INQ56_RS11545 (INQ56_11545) comGC 2251981..2252274 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=494698 INQ56_RS11500 WP_017357978.1 2247145..2247480(+) (sinR) [Bacillus altitudinis strain BIM B-263]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=494698 INQ56_RS11500 WP_017357978.1 2247145..2247480(+) (sinR) [Bacillus altitudinis strain BIM B-263]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928