Detailed information NTG0494640

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IM687_RS05235
• Genome accession: NZ_CP063358
• Coordinates: 1098358..1099221 (+)
• Length: 287 a.a.
• NCBI ID: WP_196112078.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain ZDHY95
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1093358..1104221

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM687_RS05210 (IM687_05210)	-	1093591..1094391 (-)	801	WP_196112075.1	hypothetical protein	-
IM687_RS05215 (IM687_05215)	-	1094452..1094892 (-)	441	WP_196112076.1	hypothetical protein	-
IM687_RS21855 (IM687_05220)	pilA	1094912..1095097 (-)	186	WP_272873510.1	type IV pilin protein	Machinery gene
IM687_RS05225 (IM687_05225)	pilB	1095425..1097128 (+)	1704	WP_196112077.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IM687_RS05230 (IM687_05230)	-	1097131..1098352 (+)	1222	Protein_1032	type II secretion system F family protein	-
IM687_RS05235 (IM687_05235)	pilD	1098358..1099221 (+)	864	WP_196112078.1	prepilin peptidase	Machinery gene
IM687_RS05240 (IM687_05240)	coaE	1099353..1099961 (+)	609	WP_196112079.1	dephospho-CoA kinase	-
IM687_RS05245 (IM687_05245)	yacG	1099958..1100155 (+)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
IM687_RS05250 (IM687_05250)	-	1100168..1100848 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
IM687_RS05255 (IM687_05255)	-	1100905..1101945 (-)	1041	WP_196112080.1	NADP(H)-dependent aldo-keto reductase	-
IM687_RS05260 (IM687_05260)	rplM	1102366..1102794 (+)	429	WP_003287302.1	50S ribosomal protein L13	-
IM687_RS05265 (IM687_05265)	rpsI	1102810..1103202 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
IM687_RS05270 (IM687_05270)	petA	1103457..1104050 (+)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31961.88 Da
• Isoelectric Point: 7.2177

>NTDB_id=494640 IM687_RS05235 WP_196112078.1 1098358..1099221(+) (pilD) [Stutzerimonas stutzeri strain ZDHY95]
MLDLLASQVLAFVLSAAVLGLLVGSFLNVVIYRLPIMMQREWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIRAW
ENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSLVLP
LLWLGLIANNFTLFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGAV
LGGILLRVQRAESNTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 864 bp

>NTDB_id=494640 IM687_RS05235 WP_196112078.1 1098358..1099221(+) (pilD) [Stutzerimonas stutzeri strain ZDHY95]
ATGCTTGATTTATTGGCCAGCCAAGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAGCTTTCT
CAATGTAGTAATTTACCGTTTGCCAATAATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATCCGC
CCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCCTGG
GAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATATCC
GTTGGTTGAGTTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCCGGGGCGATGC
TTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTGCTGCCG
CTCTTGTGGTTAGGGTTGATTGCCAACAACTTTACTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGCCGG
TTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGAATGGGCTACGGCGATTTCAAGC
TGCTGGCGATGCTTGGTGCCTGGGGTGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCGTCGGTGGTCGGCGCCGTG
CTTGGCGGTATTCTGCTGAGGGTGCAGCGGGCTGAAAGTAATACGCCCATTCCGTTCGGGCCGTATCTGGCGATAGCGGG
GTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAGAGCTATCTCCAGTTCGCTCGCTTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.182	95.819	0.557
pilD	Vibrio campbellii strain DS40M4	57.509	95.122	0.547
pilD	Acinetobacter baumannii D1279779	51.568	100	0.516
pilD	Acinetobacter nosocomialis M2	51.568	100	0.516
pilD	Neisseria gonorrhoeae MS11	53.232	91.638	0.488