Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IM687_RS03960 Genome accession   NZ_CP063358
Coordinates   837248..837739 (+) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas stutzeri strain ZDHY95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 832248..842739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM687_RS03950 (IM687_03950) uvrA 832740..835577 (-) 2838 WP_125873041.1 excinuclease ABC subunit UvrA -
  IM687_RS03955 (IM687_03955) - 835709..837076 (+) 1368 WP_196111993.1 MFS transporter -
  IM687_RS03960 (IM687_03960) ssb 837248..837739 (+) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  IM687_RS03965 (IM687_03965) - 837750..838634 (+) 885 WP_017244908.1 sugar nucleotide-binding protein -
  IM687_RS03970 (IM687_03970) - 838627..839556 (+) 930 WP_125856737.1 NAD-dependent epimerase/dehydratase family protein -
  IM687_RS03975 (IM687_03975) - 839627..840310 (-) 684 WP_095460570.1 OmpW/AlkL family protein -
  IM687_RS03980 (IM687_03980) - 840495..841280 (+) 786 WP_196111994.1 DUF3450 domain-containing protein -
  IM687_RS03985 (IM687_03985) - 841277..842623 (+) 1347 WP_196111995.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=494638 IM687_RS03960 WP_003281797.1 837248..837739(+) (ssb) [Stutzerimonas stutzeri strain ZDHY95]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=494638 IM687_RS03960 WP_003281797.1 837248..837739(+) (ssb) [Stutzerimonas stutzeri strain ZDHY95]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTCTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCACAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503