Detailed information NTG0494629

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: IOO21_RS07005
• Genome accession: NZ_CP063357
• Coordinates: 1372653..1374065 (-)
• Length: 470 a.a.
• NCBI ID: WP_002856543.1
• Uniprot ID: A0A2R4CZP6
• Organism: Campylobacter jejuni strain R4B202
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1367653..1379065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IOO21_RS06980	-	1367976..1368740 (+)	765	WP_002855301.1	TSUP family transporter	-
IOO21_RS06985	ctsF	1368737..1369915 (-)	1179	WP_002869197.1	type II secretion system F family protein	Machinery gene
IOO21_RS06990	ctsE	1369912..1371471 (-)	1560	WP_011812800.1	GspE/PulE family protein	Machinery gene
IOO21_RS06995	ctsX	1371461..1372048 (-)	588	WP_002851370.1	membrane protein	Machinery gene
IOO21_RS07000	ctsP	1372052..1372660 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
IOO21_RS07005	ctsD	1372653..1374065 (-)	1413	WP_002856543.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
IOO21_RS07010	ctsR	1374043..1374354 (-)	312	WP_002855438.1	hypothetical protein	Machinery gene
IOO21_RS07015	nifJ	1374378..1377938 (-)	3561	WP_002869199.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
IOO21_RS07020	-	1378031..1378672 (-)	642	WP_002869201.1	HAD family hydrolase	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53094.65 Da
• Isoelectric Point: 6.6184

>NTDB_id=494629 IOO21_RS07005 WP_002856543.1 1372653..1374065(-) (ctsD) [Campylobacter jejuni strain R4B202]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=494629 IOO21_RS07005 WP_002856543.1 1372653..1374065(-) (ctsD) [Campylobacter jejuni strain R4B202]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGTATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACTGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

3D structure

• AlphaFold DB: A0A2R4CZP6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	100	100	1