Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   IOO21_RS07010 Genome accession   NZ_CP063357
Coordinates   1374043..1374354 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain R4B202     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1369043..1379354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS06990 ctsE 1369912..1371471 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  IOO21_RS06995 ctsX 1371461..1372048 (-) 588 WP_002851370.1 membrane protein Machinery gene
  IOO21_RS07000 ctsP 1372052..1372660 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  IOO21_RS07005 ctsD 1372653..1374065 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  IOO21_RS07010 ctsR 1374043..1374354 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  IOO21_RS07015 nifJ 1374378..1377938 (-) 3561 WP_002869199.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  IOO21_RS07020 - 1378031..1378672 (-) 642 WP_002869201.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=494630 IOO21_RS07010 WP_002855438.1 1374043..1374354(-) (ctsR) [Campylobacter jejuni strain R4B202]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=494630 IOO21_RS07010 WP_002855438.1 1374043..1374354(-) (ctsR) [Campylobacter jejuni strain R4B202]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1