Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   IOO21_RS06995 Genome accession   NZ_CP063357
Coordinates   1371461..1372048 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain R4B202     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1366461..1377048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS06975 - 1367210..1367972 (+) 763 Protein_1351 TIGR02757 family protein -
  IOO21_RS06980 - 1367976..1368740 (+) 765 WP_002855301.1 TSUP family transporter -
  IOO21_RS06985 ctsF 1368737..1369915 (-) 1179 WP_002869197.1 type II secretion system F family protein Machinery gene
  IOO21_RS06990 ctsE 1369912..1371471 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  IOO21_RS06995 ctsX 1371461..1372048 (-) 588 WP_002851370.1 membrane protein Machinery gene
  IOO21_RS07000 ctsP 1372052..1372660 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  IOO21_RS07005 ctsD 1372653..1374065 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  IOO21_RS07010 ctsR 1374043..1374354 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=494627 IOO21_RS06995 WP_002851370.1 1371461..1372048(-) (ctsX) [Campylobacter jejuni strain R4B202]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=494627 IOO21_RS06995 WP_002851370.1 1371461..1372048(-) (ctsX) [Campylobacter jejuni strain R4B202]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1