Detailed information NTG0494625

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: IOO21_RS06985
• Genome accession: NZ_CP063357
• Coordinates: 1368737..1369915 (-)
• Length: 392 a.a.
• NCBI ID: WP_002869197.1
• Uniprot ID: Q7WYI6
• Organism: Campylobacter jejuni strain R4B202
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1363737..1374915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IOO21_RS06955	-	1364279..1364620 (+)	342	WP_002869194.1	hypothetical protein	-
IOO21_RS06960	flgM	1364683..1364880 (+)	198	WP_002869195.1	flagellar biosynthesis anti-sigma factor FlgM	-
IOO21_RS06965	-	1364923..1365357 (+)	435	WP_002779263.1	flagellar protein FlgN	-
IOO21_RS06970	flgK	1365367..1367193 (+)	1827	WP_002858862.1	flagellar hook-associated protein FlgK	-
IOO21_RS06975	-	1367210..1367972 (+)	763	Protein_1351	TIGR02757 family protein	-
IOO21_RS06980	-	1367976..1368740 (+)	765	WP_002855301.1	TSUP family transporter	-
IOO21_RS06985	ctsF	1368737..1369915 (-)	1179	WP_002869197.1	type II secretion system F family protein	Machinery gene
IOO21_RS06990	ctsE	1369912..1371471 (-)	1560	WP_011812800.1	GspE/PulE family protein	Machinery gene
IOO21_RS06995	ctsX	1371461..1372048 (-)	588	WP_002851370.1	membrane protein	Machinery gene
IOO21_RS07000	ctsP	1372052..1372660 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
IOO21_RS07005	ctsD	1372653..1374065 (-)	1413	WP_002856543.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
IOO21_RS07010	ctsR	1374043..1374354 (-)	312	WP_002855438.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 45698.29 Da
• Isoelectric Point: 9.0938

>NTDB_id=494625 IOO21_RS06985 WP_002869197.1 1368737..1369915(-) (ctsF) [Campylobacter jejuni strain R4B202]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNF

Nucleotide

• Length: 1179 bp

>NTDB_id=494625 IOO21_RS06985 WP_002869197.1 1368737..1369915(-) (ctsF) [Campylobacter jejuni strain R4B202]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGTGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCGGGGGTCAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (261-382)

• Type II secretion system (T2SS), protein F (T2SSF) (60-179)

3D structure

• AlphaFold DB: Q7WYI6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	100	100	1