Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AWH56_RS07035 | Genome accession | NZ_CP063356 |
| Coordinates | 1424834..1425325 (-) | Length | 163 a.a. |
| NCBI ID | WP_071315367.1 | Uniprot ID | A0A1S2MFL4 |
| Organism | Anaerobacillus isosaccharinicus strain NB2006 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1410545..1454187 | 1424834..1425325 | within | 0 |
Gene organization within MGE regions
Location: 1410545..1454187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWH56_RS06940 (AWH56_006940) | yycF | 1410545..1411246 (-) | 702 | WP_071315378.1 | response regulator YycF | - |
| AWH56_RS06945 (AWH56_006945) | - | 1411553..1413067 (-) | 1515 | WP_083388398.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| AWH56_RS06980 (AWH56_006980) | - | 1414425..1415711 (-) | 1287 | WP_071315377.1 | adenylosuccinate synthase | - |
| AWH56_RS06985 (AWH56_006985) | queF | 1415917..1416408 (-) | 492 | WP_071315376.1 | preQ(1) synthase | - |
| AWH56_RS06990 (AWH56_006990) | queE | 1416411..1417136 (-) | 726 | WP_071315375.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| AWH56_RS06995 (AWH56_006995) | queD | 1417133..1417621 (-) | 489 | WP_071315374.1 | 6-carboxytetrahydropterin synthase QueD | - |
| AWH56_RS07000 (AWH56_007000) | queC | 1417614..1418282 (-) | 669 | WP_071315373.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| AWH56_RS07005 (AWH56_007005) | dnaB | 1418611..1419981 (-) | 1371 | WP_071315372.1 | replicative DNA helicase | - |
| AWH56_RS07010 (AWH56_007010) | rplI | 1420101..1420544 (-) | 444 | WP_071315371.1 | 50S ribosomal protein L9 | - |
| AWH56_RS07015 (AWH56_007015) | - | 1420541..1422511 (-) | 1971 | WP_071315370.1 | DHH family phosphoesterase | - |
| AWH56_RS07020 (AWH56_007020) | - | 1422527..1423462 (-) | 936 | WP_071315369.1 | YybS family protein | - |
| AWH56_RS07025 (AWH56_007025) | - | 1423692..1424348 (-) | 657 | WP_071315368.1 | potassium channel family protein | - |
| AWH56_RS07030 (AWH56_007030) | rpsR | 1424501..1424740 (-) | 240 | WP_238938037.1 | 30S ribosomal protein S18 | - |
| AWH56_RS07035 (AWH56_007035) | ssbA | 1424834..1425325 (-) | 492 | WP_071315367.1 | single-stranded DNA-binding protein | Machinery gene |
| AWH56_RS07040 (AWH56_007040) | rpsF | 1425357..1425644 (-) | 288 | WP_071315366.1 | 30S ribosomal protein S6 | - |
| AWH56_RS07045 (AWH56_007045) | ychF | 1425858..1426958 (-) | 1101 | WP_071315365.1 | redox-regulated ATPase YchF | - |
| AWH56_RS07050 (AWH56_007050) | - | 1427220..1429220 (-) | 2001 | WP_182080393.1 | molybdopterin-dependent oxidoreductase | - |
| AWH56_RS07055 (AWH56_007055) | - | 1429252..1429452 (-) | 201 | WP_071315363.1 | DUF951 domain-containing protein | - |
| AWH56_RS07060 (AWH56_007060) | - | 1429583..1430605 (-) | 1023 | WP_108721315.1 | hypothetical protein | - |
| AWH56_RS07065 (AWH56_007065) | yyaC | 1430704..1431324 (+) | 621 | WP_108721314.1 | spore protease YyaC | - |
| AWH56_RS07070 (AWH56_007070) | - | 1431504..1432205 (-) | 702 | WP_071315360.1 | DUF554 domain-containing protein | - |
| AWH56_RS07075 (AWH56_007075) | - | 1432218..1433378 (-) | 1161 | WP_071315359.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| AWH56_RS07080 (AWH56_007080) | - | 1433523..1434368 (-) | 846 | WP_071315358.1 | ParB/RepB/Spo0J family partition protein | - |
| AWH56_RS07085 (AWH56_007085) | - | 1434361..1435122 (-) | 762 | WP_071315357.1 | ParA family protein | - |
| AWH56_RS07090 (AWH56_007090) | noc | 1435389..1436249 (-) | 861 | WP_071315356.1 | nucleoid occlusion protein | - |
| AWH56_RS07095 (AWH56_007095) | rsmG | 1436491..1437204 (-) | 714 | WP_071315355.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| AWH56_RS07100 (AWH56_007100) | mnmG | 1437197..1439101 (-) | 1905 | WP_071315354.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| AWH56_RS07105 (AWH56_007105) | mnmE | 1439219..1440595 (-) | 1377 | WP_071315353.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| AWH56_RS07110 (AWH56_007110) | jag | 1441015..1441638 (-) | 624 | WP_071315352.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| AWH56_RS07115 (AWH56_007115) | spoIIIJ | 1441635..1442408 (-) | 774 | WP_071315351.1 | YidC family membrane integrase SpoIIIJ | - |
| AWH56_RS07120 (AWH56_007120) | yidD | 1442512..1442766 (-) | 255 | WP_071315454.1 | membrane protein insertion efficiency factor YidD | - |
| AWH56_RS07125 (AWH56_007125) | rnpA | 1442779..1443129 (-) | 351 | WP_071315350.1 | ribonuclease P protein component | - |
| AWH56_RS07130 (AWH56_007130) | rpmH | 1443597..1443734 (-) | 138 | WP_071315349.1 | 50S ribosomal protein L34 | - |
| AWH56_RS07135 (AWH56_007135) | dnaA | 1444544..1445896 (+) | 1353 | WP_071315348.1 | chromosomal replication initiator protein DnaA | - |
| AWH56_RS07140 (AWH56_007140) | dnaN | 1446167..1447309 (+) | 1143 | WP_071315347.1 | DNA polymerase III subunit beta | - |
| AWH56_RS07145 (AWH56_007145) | yaaA | 1447502..1447723 (+) | 222 | WP_071315346.1 | S4 domain-containing protein YaaA | - |
| AWH56_RS07150 (AWH56_007150) | recF | 1448013..1449128 (+) | 1116 | WP_071315345.1 | DNA replication/repair protein RecF | - |
| AWH56_RS07155 (AWH56_007155) | remB | 1449138..1449395 (+) | 258 | WP_071315344.1 | extracellular matrix regulator RemB | - |
| AWH56_RS07160 (AWH56_007160) | gyrB | 1449525..1451438 (+) | 1914 | WP_071315453.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| AWH56_RS07165 (AWH56_007165) | gyrA | 1451677..1454187 (+) | 2511 | WP_071315343.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17813.45 Da Isoelectric Point: 4.9222
>NTDB_id=494581 AWH56_RS07035 WP_071315367.1 1424834..1425325(-) (ssbA) [Anaerobacillus isosaccharinicus strain NB2006]
MLNRVVLVGRLTRDPELKYTPNGIAVASITLAVNRPFSNQQGNREADFINVVIWRKQAENVANYLRKGSLAGVDGRLQTR
NYENNEGKKVFITEVVADSVQFLETKGSNNSGGNQGGGDYYGSPNQGGNNNNQNQGRSNQSFSDDPFASDGKPIDISDDD
LPF
MLNRVVLVGRLTRDPELKYTPNGIAVASITLAVNRPFSNQQGNREADFINVVIWRKQAENVANYLRKGSLAGVDGRLQTR
NYENNEGKKVFITEVVADSVQFLETKGSNNSGGNQGGGDYYGSPNQGGNNNNQNQGRSNQSFSDDPFASDGKPIDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=494581 AWH56_RS07035 WP_071315367.1 1424834..1425325(-) (ssbA) [Anaerobacillus isosaccharinicus strain NB2006]
ATGCTTAACCGTGTCGTTCTGGTAGGTCGACTCACAAGAGATCCTGAACTTAAGTACACGCCGAATGGAATTGCTGTAGC
AAGTATTACACTTGCTGTAAACAGACCATTTTCTAACCAACAAGGTAACCGAGAAGCAGACTTTATTAACGTAGTCATTT
GGCGTAAACAAGCAGAAAATGTTGCTAATTACTTACGTAAAGGAAGTTTAGCGGGTGTTGATGGTCGTCTACAAACTCGT
AATTATGAAAACAATGAAGGAAAGAAAGTTTTTATAACGGAAGTTGTAGCTGATAGTGTGCAATTTCTTGAAACGAAAGG
CTCTAACAATTCTGGTGGAAATCAGGGCGGTGGAGACTATTATGGCTCTCCTAATCAAGGAGGAAATAATAACAACCAGA
ATCAAGGCCGTAGTAATCAGTCATTTTCTGATGATCCTTTTGCTAGTGATGGCAAGCCAATTGATATCTCAGATGATGAT
TTACCATTCTAG
ATGCTTAACCGTGTCGTTCTGGTAGGTCGACTCACAAGAGATCCTGAACTTAAGTACACGCCGAATGGAATTGCTGTAGC
AAGTATTACACTTGCTGTAAACAGACCATTTTCTAACCAACAAGGTAACCGAGAAGCAGACTTTATTAACGTAGTCATTT
GGCGTAAACAAGCAGAAAATGTTGCTAATTACTTACGTAAAGGAAGTTTAGCGGGTGTTGATGGTCGTCTACAAACTCGT
AATTATGAAAACAATGAAGGAAAGAAAGTTTTTATAACGGAAGTTGTAGCTGATAGTGTGCAATTTCTTGAAACGAAAGG
CTCTAACAATTCTGGTGGAAATCAGGGCGGTGGAGACTATTATGGCTCTCCTAATCAAGGAGGAAATAATAACAACCAGA
ATCAAGGCCGTAGTAATCAGTCATTTTCTGATGATCCTTTTGCTAGTGATGGCAAGCCAATTGATATCTCAGATGATGAT
TTACCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
68.208 |
100 |
0.724 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.933 |
100 |
0.589 |
| ssb | Glaesserella parasuis strain SC1401 |
35.955 |
100 |
0.393 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
65.031 |
0.393 |