Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IM703_RS06650 Genome accession   NZ_CP063314
Coordinates   1455013..1455540 (-) Length   175 a.a.
NCBI ID   WP_088494417.1    Uniprot ID   -
Organism   Proteus vulgaris strain LC-693     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1450013..1460540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM703_RS06625 (IM703_06625) - 1452415..1452786 (+) 372 WP_006536373.1 diacylglycerol kinase -
  IM703_RS06630 (IM703_06630) lexA 1452914..1453525 (+) 612 WP_072070935.1 transcriptional repressor LexA -
  IM703_RS06635 (IM703_06635) - 1453686..1453940 (+) 255 WP_196554568.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  IM703_RS06640 (IM703_06640) - 1453930..1454235 (+) 306 WP_196554567.1 type II toxin-antitoxin system RelE family toxin -
  IM703_RS06645 (IM703_06645) zur 1454269..1454799 (-) 531 WP_072070933.1 zinc uptake transcriptional repressor Zur -
  IM703_RS06650 (IM703_06650) ssb 1455013..1455540 (-) 528 WP_088494417.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IM703_RS06655 (IM703_06655) uvrA 1455793..1458627 (+) 2835 WP_197269818.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18874.92 Da        Isoelectric Point: 4.9468

>NTDB_id=494384 IM703_RS06650 WP_088494417.1 1455013..1455540(-) (ssb) [Proteus vulgaris strain LC-693]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGSMQMLGGRGGQDGAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPA
PNNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=494384 IM703_RS06650 WP_088494417.1 1455013..1455540(-) (ssb) [Proteus vulgaris strain LC-693]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAACCTAACACTGGCAACATCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCTGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACAGATATAGCACTGAAGTTGTCGTTAACATCGG
TGGCTCAATGCAGATGTTAGGTGGTCGTGGTGGTCAAGATGGTGCGCCTTCACAAGGTGGTCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTCAGCGGTGGTGCGCAATCTCGCCCAGCACAACAACCCGCAGCAGCTCCAGCG
CCGAACAATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.514

100

0.777
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497