Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JNUCC6_RS14695 Genome accession   NZ_CP063302
Coordinates   2967480..2968028 (+) Length   182 a.a.
NCBI ID   WP_053418427.1    Uniprot ID   A0A0M0LBM4
Organism   Viridibacillus sp. JNUCC-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2962480..2973028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC6_RS14660 (JNUCC6_14660) - 2962759..2963463 (+) 705 WP_193737898.1 DUF554 domain-containing protein -
  JNUCC6_RS14665 (JNUCC6_14665) yyaC 2963407..2964015 (-) 609 WP_193737899.1 spore protease YyaC -
  JNUCC6_RS14670 (JNUCC6_14670) - 2964111..2964974 (+) 864 WP_227751954.1 mechanosensitive ion channel family protein -
  JNUCC6_RS14675 (JNUCC6_14675) - 2964977..2965192 (+) 216 WP_053418424.1 DUF951 domain-containing protein -
  JNUCC6_RS14680 (JNUCC6_14680) ychF 2965275..2966375 (+) 1101 WP_193737900.1 redox-regulated ATPase YchF -
  JNUCC6_RS14685 (JNUCC6_14685) - 2966426..2966977 (-) 552 WP_227751955.1 DUF3267 domain-containing protein -
  JNUCC6_RS14690 (JNUCC6_14690) rpsF 2967147..2967437 (+) 291 WP_193737901.1 30S ribosomal protein S6 -
  JNUCC6_RS14695 (JNUCC6_14695) ssbA 2967480..2968028 (+) 549 WP_053418427.1 single-stranded DNA-binding protein Machinery gene
  JNUCC6_RS14700 (JNUCC6_14700) rpsR 2968084..2968320 (+) 237 WP_038178800.1 30S ribosomal protein S18 -
  JNUCC6_RS14705 (JNUCC6_14705) - 2968543..2969484 (+) 942 WP_193737902.1 YybS family protein -
  JNUCC6_RS14710 (JNUCC6_14710) - 2969498..2971474 (+) 1977 WP_193737903.1 DHH family phosphoesterase -
  JNUCC6_RS14715 (JNUCC6_14715) rplI 2971471..2971920 (+) 450 WP_193737904.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20116.90 Da        Isoelectric Point: 4.7815

>NTDB_id=494306 JNUCC6_RS14695 WP_053418427.1 2967480..2968028(+) (ssbA) [Viridibacillus sp. JNUCC-6]
MINRVVLVGRLTKDPELRYTPSGAAVARFTIAVNRTFANQQGEKQADFINCVVWRKQAENTANFLKKGSLAGIEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPRGAAGDRSQGQQQYGGQPSYGGEQSYGQAPQQNNYQQQPSYQQNQSPSQQNYTRV
DEDPFANNNGGPIEVSEDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=494306 JNUCC6_RS14695 WP_053418427.1 2967480..2968028(+) (ssbA) [Viridibacillus sp. JNUCC-6]
ATGATTAACCGAGTCGTATTAGTCGGAAGACTAACAAAAGATCCGGAACTTCGCTATACACCAAGTGGCGCAGCTGTTGC
TCGCTTTACAATCGCTGTAAATAGAACATTTGCTAACCAACAAGGTGAAAAACAAGCGGACTTTATTAACTGTGTTGTTT
GGCGTAAACAAGCTGAAAATACTGCTAACTTCTTGAAAAAAGGAAGCCTAGCGGGCATAGAAGGCCGTATCCAAACAGGT
AGTTATGAAGGACAGGATGGTAAACGTGTTTACACAACTGAAGTTGTTGCAGATAGCGTGCAGTTCTTAGAGCCGCGCGG
TGCTGCAGGAGATCGTTCGCAAGGACAGCAACAGTACGGTGGACAACCATCATATGGTGGTGAACAATCGTACGGCCAAG
CTCCACAACAAAACAACTATCAGCAACAACCATCTTATCAACAGAATCAATCACCTAGTCAGCAAAACTATACGCGTGTA
GATGAAGATCCATTTGCTAACAACAATGGTGGTCCAATCGAAGTTTCTGAAGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0LBM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.242

100

0.582
  ssb Latilactobacillus sakei subsp. sakei 23K

52.973

100

0.538
  ssb Vibrio cholerae strain A1552

34.536

100

0.368
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

58.242

0.363