Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IHJ54_RS16995 Genome accession   NZ_CP063241
Coordinates   3841237..3841779 (+) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium brasiliense strain ZLMLSHJ5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3836237..3846779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHJ54_RS16985 (IHJ54_16970) - 3837717..3838136 (-) 420 WP_203449523.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IHJ54_RS16990 (IHJ54_16975) uvrA 3838152..3840986 (-) 2835 WP_203449524.1 excinuclease ABC subunit UvrA -
  IHJ54_RS16995 (IHJ54_16980) ssb 3841237..3841779 (+) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IHJ54_RS17000 (IHJ54_16985) - 3841935..3842549 (-) 615 WP_203449525.1 hypothetical protein -
  IHJ54_RS17005 (IHJ54_16990) - 3842782..3843240 (+) 459 WP_203449526.1 GNAT family N-acetyltransferase -
  IHJ54_RS17010 (IHJ54_16995) - 3843327..3844364 (-) 1038 WP_039465875.1 LacI family DNA-binding transcriptional regulator -
  IHJ54_RS17015 (IHJ54_17000) - 3844364..3845416 (-) 1053 WP_014916590.1 carbohydrate ABC transporter permease -
  IHJ54_RS17020 (IHJ54_17005) - 3845425..3846423 (-) 999 WP_010279314.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=494103 IHJ54_RS16995 WP_039283288.1 3841237..3841779(+) (ssb) [Pectobacterium brasiliense strain ZLMLSHJ5]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=494103 IHJ54_RS16995 WP_039283288.1 3841237..3841779(+) (ssb) [Pectobacterium brasiliense strain ZLMLSHJ5]
ATGGCCAGCAGAGGCGTTAATAAAGTAATTCTTGTCGGAAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGTCCGGCCCAG
AACAGCGCTCCCGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461