Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IM817_RS23525 Genome accession   NZ_CP063229
Coordinates   4910761..4911303 (-) Length   180 a.a.
NCBI ID   WP_219228851.1    Uniprot ID   -
Organism   Serratia marcescens strain LVF3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4905761..4916303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM817_RS23495 (IM817_23510) - 4906086..4907447 (-) 1362 WP_219228847.1 NCS2 family permease -
  IM817_RS23500 (IM817_23515) - 4907780..4908187 (-) 408 WP_219228848.1 VOC family protein -
  IM817_RS23505 (IM817_23520) - 4908235..4908903 (-) 669 WP_049201475.1 glutathione S-transferase family protein -
  IM817_RS23510 (IM817_23525) - 4908900..4909343 (-) 444 WP_219228849.1 lipocalin-like domain-containing protein -
  IM817_RS23515 (IM817_23530) - 4909539..4909799 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  IM817_RS23520 (IM817_23535) - 4909949..4910698 (+) 750 WP_219228850.1 3-oxoacyl-ACP reductase family protein -
  IM817_RS23525 (IM817_23540) ssb 4910761..4911303 (-) 543 WP_219228851.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IM817_RS23530 (IM817_23545) uvrA 4911581..4914409 (+) 2829 WP_219228852.1 excinuclease ABC subunit UvrA -
  IM817_RS23535 (IM817_23550) - 4914638..4915690 (+) 1053 WP_063988540.1 NAD(P)-dependent alcohol dehydrogenase -
  IM817_RS23540 (IM817_23555) maa 4915721..4916278 (-) 558 WP_257590171.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19023.96 Da        Isoelectric Point: 5.2456

>NTDB_id=493962 IM817_RS23525 WP_219228851.1 4910761..4911303(-) (ssb) [Serratia marcescens strain LVF3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGQGGWGQPQQPQGGNQFSGGQQQSRPAQN
SAPAASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=493962 IM817_RS23525 WP_219228851.1 4910761..4911303(-) (ssb) [Serratia marcescens strain LVF3]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAGAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAAAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGACCGATCAGTCCGGCGTGGAAAAATACACCACCGAAGTGGTGGTTAACGTCGG
TGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGCCAGG
GCGGTTGGGGCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAAC
AGCGCTCCGGCGGCCAGCAGCAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.75
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.589
  ssb Neisseria meningitidis MC58

45.213

100

0.472
  ssb Neisseria gonorrhoeae MS11

45.213

100

0.472