Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INR77_RS04020 Genome accession   NZ_CP063202
Coordinates   855639..856157 (+) Length   172 a.a.
NCBI ID   WP_223072636.1    Uniprot ID   -
Organism   Erythrobacter sp. SCSIO 43205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 850639..861157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR77_RS03985 (INR77_03985) - 850879..851409 (-) 531 WP_223072629.1 hypothetical protein -
  INR77_RS03990 (INR77_03990) - 851471..852040 (-) 570 WP_223072630.1 DUF4402 domain-containing protein -
  INR77_RS03995 (INR77_03995) - 852208..852945 (-) 738 WP_223072631.1 M48 family metallopeptidase -
  INR77_RS04000 (INR77_04000) - 852942..853436 (-) 495 WP_223072632.1 YcgN family cysteine cluster protein -
  INR77_RS04005 (INR77_04005) - 853424..854032 (-) 609 WP_223072633.1 SCO family protein -
  INR77_RS04010 (INR77_04010) - 854137..854784 (+) 648 WP_255573926.1 ankyrin repeat domain-containing protein -
  INR77_RS04015 (INR77_04015) - 854808..855485 (+) 678 WP_223072635.1 COQ9 family protein -
  INR77_RS04020 (INR77_04020) ssb 855639..856157 (+) 519 WP_223072636.1 single-stranded DNA-binding protein Machinery gene
  INR77_RS04025 (INR77_04025) - 856202..856738 (-) 537 WP_223072637.1 DUF177 domain-containing protein -
  INR77_RS04030 (INR77_04030) - 856735..857262 (-) 528 WP_223072638.1 ubiquinol-cytochrome C chaperone family protein -
  INR77_RS04035 (INR77_04035) - 857514..857993 (+) 480 WP_223072639.1 outer membrane protein assembly factor BamE -
  INR77_RS04040 (INR77_04040) hslV 858040..858600 (+) 561 WP_223072640.1 ATP-dependent protease subunit HslV -
  INR77_RS04045 (INR77_04045) hslU 858627..859928 (+) 1302 WP_223072641.1 ATP-dependent protease ATPase subunit HslU -
  INR77_RS04050 (INR77_04050) - 859925..860320 (+) 396 WP_255573927.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17680.27 Da        Isoelectric Point: 5.2341

>NTDB_id=493839 INR77_RS04020 WP_223072636.1 855639..856157(+) (ssb) [Erythrobacter sp. SCSIO 43205]
MAGSLNKVMLIGNLGADPEIRSFQNGGRVANLRIATSENWKDKNTGERREKTEWHTVAIFSDGLVNVVERYLKKGSKVFV
EGKLQTRKWQDQNGNDRYSTEVVIQGMGGTLTMLDGGGYGGGQGGGGQGGGYGGGGQGGGGGWNQGGGGQSGGSAGGSSG
GGYDDLDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=493839 INR77_RS04020 WP_223072636.1 855639..856157(+) (ssb) [Erythrobacter sp. SCSIO 43205]
ATGGCAGGCTCGCTCAACAAAGTAATGCTGATCGGCAATCTGGGGGCAGACCCGGAAATTCGGTCGTTCCAGAACGGCGG
GCGCGTTGCGAACCTGCGCATTGCAACCTCCGAAAACTGGAAAGACAAAAACACTGGCGAGCGCCGCGAGAAAACCGAAT
GGCACACGGTTGCCATTTTCTCCGACGGGCTTGTCAATGTGGTTGAGCGTTACCTGAAAAAAGGCTCGAAAGTCTTTGTC
GAGGGTAAGCTGCAAACCCGCAAATGGCAGGACCAAAACGGCAATGATCGCTACTCAACCGAGGTCGTCATCCAAGGCAT
GGGCGGCACGCTCACTATGCTTGATGGCGGTGGCTATGGCGGTGGCCAAGGTGGCGGCGGTCAGGGCGGTGGCTACGGTG
GCGGCGGCCAAGGAGGTGGTGGCGGCTGGAACCAAGGTGGCGGCGGCCAGAGCGGCGGTTCTGCTGGCGGCAGCTCGGGC
GGCGGCTACGACGACCTCGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

100

0.517
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.512
  ssb Neisseria gonorrhoeae MS11

37.017

100

0.39
  ssb Neisseria meningitidis MC58

36.464

100

0.384