Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INQ48_RS28890 Genome accession   NZ_CP063166
Coordinates   6177647..6178186 (-) Length   179 a.a.
NCBI ID   WP_203203116.1    Uniprot ID   -
Organism   Variovorax paradoxus strain VAI-C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6172647..6183186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ48_RS28880 (INQ48_28860) - 6173724..6175940 (-) 2217 WP_203203115.1 PQQ-binding-like beta-propeller repeat protein -
  INQ48_RS28885 (INQ48_28865) - 6176059..6177108 (-) 1050 WP_281080938.1 ThuA domain-containing protein -
  INQ48_RS28890 (INQ48_28870) ssb 6177647..6178186 (-) 540 WP_203203116.1 single-stranded DNA-binding protein Machinery gene
  INQ48_RS28895 (INQ48_28875) - 6178325..6179692 (+) 1368 WP_203203117.1 chloride channel protein -
  INQ48_RS28900 (INQ48_28880) uvrA 6179740..6182835 (+) 3096 WP_408908671.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18981.99 Da        Isoelectric Point: 6.9830

>NTDB_id=493690 INQ48_RS28890 WP_203203116.1 6177647..6178186(-) (ssb) [Variovorax paradoxus strain VAI-C]
MASVNKVILVGNLGRDPETRTFPSGDQVCNATLATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQIYVEG
QIRTRKYTDKDGVEKYATDIRVDQMQMLGSRQGQGAPAGGGYDDGGYSQGGNGGGGGGGYAPAPARAPAAAPRAPAPAPR
QAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=493690 INQ48_RS28890 WP_203203116.1 6177647..6178186(-) (ssb) [Variovorax paradoxus strain VAI-C]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAACCTCGGCCGCGATCCCGAAACCCGTACCTTCCCGAGCGGCGACCA
GGTGTGCAACGCGACCCTCGCGACCACCGACAAGTGGAAGGACAAGCAAAGCGGCGAGATGCGCGAAGCCACCGAGTGGC
ACCGTCTCGTGTTCAACGGCCGCCTGGCCGAAATCGCCGCGCAGTACCTGCGCAAGGGCTCGCAGATCTACGTCGAAGGC
CAGATCCGCACGCGCAAGTACACCGACAAGGACGGCGTCGAGAAGTACGCGACCGACATCCGCGTCGACCAGATGCAGAT
GCTCGGCAGCCGTCAGGGCCAGGGCGCCCCGGCGGGCGGCGGCTACGACGACGGCGGTTACTCGCAGGGCGGCAATGGCG
GTGGCGGTGGTGGCGGCTATGCACCCGCACCGGCACGCGCTCCGGCCGCCGCGCCGCGCGCACCGGCGCCCGCGCCGCGC
CAGGCACCGGCCAAGTCCTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.938

100

0.52
  ssb Vibrio cholerae strain A1552

46.486

100

0.48
  ssb Neisseria gonorrhoeae MS11

47.191

99.441

0.469
  ssb Neisseria meningitidis MC58

46.927

100

0.469