Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IMZ18_RS18595 Genome accession   NZ_CP063151
Coordinates   3497891..3498409 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3492891..3503409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS18575 (IMZ18_18575) yyzM 3493965..3494171 (+) 207 WP_003226838.1 DUF951 family protein -
  IMZ18_RS18580 (IMZ18_18580) yyaE 3494222..3496225 (+) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  IMZ18_RS18585 (IMZ18_18585) ychF 3496352..3497452 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  IMZ18_RS18590 (IMZ18_18590) rpsF 3497563..3497850 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  IMZ18_RS18595 (IMZ18_18595) ssbA 3497891..3498409 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  IMZ18_RS18600 (IMZ18_18600) rpsR 3498453..3498692 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  IMZ18_RS18605 (IMZ18_18605) xth 3498757..3499515 (+) 759 WP_014481508.1 exodeoxyribonuclease III -
  IMZ18_RS18610 (IMZ18_18610) ccpB 3499575..3499949 (+) 375 Protein_3641 transcriptional regulator CcpB -
  IMZ18_RS18615 (IMZ18_18615) - 3500869..3502143 (-) 1275 WP_014481505.1 MFS transporter -
  IMZ18_RS18620 (IMZ18_18620) - 3502121..3503149 (-) 1029 WP_014481504.1 AAA family ATPase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=493502 IMZ18_RS18595 WP_003219228.1 3497891..3498409(+) (ssbA) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=493502 IMZ18_RS18595 WP_003219228.1 3497891..3498409(+) (ssbA) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378