Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IMY14_RS21770 Genome accession   NZ_CP063150
Coordinates   4192367..4192885 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain s-16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4187367..4197885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS21740 yyaJ 4187872..4189227 (+) 1356 WP_015483979.1 MFS transporter -
  IMY14_RS21745 maa 4189261..4189815 (-) 555 WP_047183517.1 sugar O-acetyltransferase -
  IMY14_RS21750 yyaH 4189831..4190211 (-) 381 WP_015483980.1 VOC family protein -
  IMY14_RS21755 ccpB 4190267..4191202 (-) 936 WP_047183518.1 transcriptional regulator CcpB -
  IMY14_RS21760 xth 4191261..4192019 (-) 759 WP_047183519.1 exodeoxyribonuclease III -
  IMY14_RS21765 rpsR 4192084..4192323 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  IMY14_RS21770 ssbA 4192367..4192885 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  IMY14_RS21775 rpsF 4192926..4193213 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  IMY14_RS21780 ychF 4193324..4194424 (-) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  IMY14_RS21785 yyaE 4194551..4196554 (-) 2004 WP_047183520.1 molybdopterin-dependent oxidoreductase -
  IMY14_RS21790 yyzM 4196605..4196811 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=493435 IMY14_RS21770 WP_003219228.1 4192367..4192885(-) (ssbA) [Bacillus subtilis strain s-16]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=493435 IMY14_RS21770 WP_003219228.1 4192367..4192885(-) (ssbA) [Bacillus subtilis strain s-16]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378