Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IMZ86_RS11895 Genome accession   NZ_CP063143
Coordinates   2514035..2514544 (-) Length   169 a.a.
NCBI ID   WP_002461102.1    Uniprot ID   A0A133Q7N8
Organism   Staphylococcus lugdunensis strain IVK28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2503280..2515965 2514035..2514544 within 0


Gene organization within MGE regions


Location: 2503280..2515965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ86_RS11810 (IMZ86_11810) - 2503280..2503852 (-) 573 WP_002445377.1 terminase small subunit -
  IMZ86_RS11815 (IMZ86_11815) - 2503915..2504436 (-) 522 WP_002445376.1 coiled-coil domain-containing protein -
  IMZ86_RS11820 (IMZ86_11820) - 2504448..2504681 (-) 234 WP_002492317.1 hypothetical protein -
  IMZ86_RS11825 (IMZ86_11825) - 2504695..2505039 (-) 345 WP_002445374.1 hypothetical protein -
  IMZ86_RS11830 (IMZ86_11830) - 2505325..2505966 (-) 642 WP_002492071.1 pathogenicity island protein -
  IMZ86_RS11835 (IMZ86_11835) - 2505968..2506489 (-) 522 WP_002492062.1 hypothetical protein -
  IMZ86_RS11840 (IMZ86_11840) - 2506814..2508523 (-) 1710 WP_002492057.1 DUF927 domain-containing protein -
  IMZ86_RS11845 (IMZ86_11845) - 2508537..2509406 (-) 870 WP_002492075.1 primase alpha helix C-terminal domain-containing protein -
  IMZ86_RS11850 (IMZ86_11850) tscT 2509500..2509802 (-) 303 WP_002492064.1 type II toxin-antitoxin system toxin TscT -
  IMZ86_RS11855 (IMZ86_11855) - 2509802..2510221 (-) 420 WP_002492019.1 hypothetical protein -
  IMZ86_RS11860 (IMZ86_11860) - 2510211..2510369 (-) 159 WP_002492040.1 hypothetical protein -
  IMZ86_RS11865 (IMZ86_11865) - 2510386..2510658 (-) 273 WP_002492070.1 helix-turn-helix domain-containing protein -
  IMZ86_RS11870 (IMZ86_11870) - 2510659..2510880 (-) 222 WP_002492076.1 helix-turn-helix transcriptional regulator -
  IMZ86_RS11875 (IMZ86_11875) - 2511052..2511624 (+) 573 WP_002459648.1 helix-turn-helix domain-containing protein -
  IMZ86_RS11880 (IMZ86_11880) - 2511651..2512343 (+) 693 WP_002459649.1 hypothetical protein -
  IMZ86_RS11885 (IMZ86_11885) - 2512380..2513600 (+) 1221 WP_002492008.1 tyrosine-type recombinase/integrase -
  IMZ86_RS11890 (IMZ86_11890) rpsR 2513746..2513988 (-) 243 WP_002461103.1 30S ribosomal protein S18 -
  IMZ86_RS11895 (IMZ86_11895) ssbA 2514035..2514544 (-) 510 WP_002461102.1 single-stranded DNA-binding protein Machinery gene
  IMZ86_RS11900 (IMZ86_11900) rpsF 2514566..2514862 (-) 297 WP_002461101.1 30S ribosomal protein S6 -
  IMZ86_RS11905 (IMZ86_11905) - 2515180..2515965 (+) 786 WP_002461100.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18747.34 Da        Isoelectric Point: 4.9366

>NTDB_id=493320 IMZ86_RS11895 WP_002461102.1 2514035..2514544(-) (ssbA) [Staphylococcus lugdunensis strain IVK28]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLNKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNNASKSNQNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=493320 IMZ86_RS11895 WP_002461102.1 2514035..2514544(-) (ssbA) [Staphylococcus lugdunensis strain IVK28]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACCAAAGATCCAGAATACAGAACTACTCCCTCAGGCGTAAGTGTAGC
GACTTTTACTTTAGCTGTTAATCGTACATTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATCAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAACGTTAATAACTATTTAAATAAAGGTAGTTTAGCCGGCGTTGATGGTCGCTTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACCGAAGTTGTATGCGACAGTGTTCAATTCCTTGAACCTAAGAA
CGCACAACATGGTGGCCAACGTTCACAAAACAATGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCATATAATAACAATAACGCATCAAAATCTAATCAAAACGATAATCCATTTGCCAATGCTAATGGACCGATT
GATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133Q7N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.896

100

0.675
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.722

0.373
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361