NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	IMZ86_RS11895	Genome accession	NZ_CP063143
Coordinates	2514035..2514544 (-)	Length	169 a.a.
NCBI ID	WP_002461102.1	Uniprot ID	A0A133Q7N8
Organism	Staphylococcus lugdunensis strain IVK28
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2509035..2519544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMZ86_RS11850 (IMZ86_11850)	tscT	2509500..2509802 (-)	303	WP_002492064.1	type II toxin-antitoxin system toxin TscT	-
IMZ86_RS11855 (IMZ86_11855)	-	2509802..2510221 (-)	420	WP_002492019.1	hypothetical protein	-
IMZ86_RS11860 (IMZ86_11860)	-	2510211..2510369 (-)	159	WP_002492040.1	hypothetical protein	-
IMZ86_RS11865 (IMZ86_11865)	-	2510386..2510658 (-)	273	WP_002492070.1	helix-turn-helix domain-containing protein	-
IMZ86_RS11870 (IMZ86_11870)	-	2510659..2510880 (-)	222	WP_002492076.1	helix-turn-helix transcriptional regulator	-
IMZ86_RS11875 (IMZ86_11875)	-	2511052..2511624 (+)	573	WP_002459648.1	helix-turn-helix domain-containing protein	-
IMZ86_RS11880 (IMZ86_11880)	-	2511651..2512343 (+)	693	WP_002459649.1	hypothetical protein	-
IMZ86_RS11885 (IMZ86_11885)	-	2512380..2513600 (+)	1221	WP_002492008.1	tyrosine-type recombinase/integrase	-
IMZ86_RS11890 (IMZ86_11890)	rpsR	2513746..2513988 (-)	243	WP_002461103.1	30S ribosomal protein S18	-
IMZ86_RS11895 (IMZ86_11895)	ssbA	2514035..2514544 (-)	510	WP_002461102.1	single-stranded DNA-binding protein	Machinery gene
IMZ86_RS11900 (IMZ86_11900)	rpsF	2514566..2514862 (-)	297	WP_002461101.1	30S ribosomal protein S6	-
IMZ86_RS11905 (IMZ86_11905)	-	2515180..2515965 (+)	786	WP_002461100.1	GH25 family lysozyme	-
IMZ86_RS11910 (IMZ86_11910)	-	2516027..2516218 (+)	192	WP_002479240.1	hypothetical protein	-
IMZ86_RS11915 (IMZ86_11915)	ychF	2516458..2517555 (-)	1098	WP_002479239.1	redox-regulated ATPase YchF	-
IMZ86_RS11920 (IMZ86_11920)	-	2517555..2517770 (-)	216	WP_002479238.1	DUF951 domain-containing protein	-
IMZ86_RS11925 (IMZ86_11925)	-	2517788..2518669 (-)	882	WP_002479237.1	mechanosensitive ion channel family protein	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18747.34 Da Isoelectric Point: 4.9366

                                >NTDB_id=493320 IMZ86_RS11895 WP_002461102.1 2514035..2514544(-) (ssbA) [Staphylococcus lugdunensis strain IVK28]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLNKGSLAGVDGRLQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNNASKSNQNDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=493320 IMZ86_RS11895 WP_002461102.1 2514035..2514544(-) (ssbA) [Staphylococcus lugdunensis strain IVK28]

ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACCAAAGATCCAGAATACAGAACTACTCCCTCAGGCGTAAGTGTAGC

GACTTTTACTTTAGCTGTTAATCGTACATTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATCAACTGTGTTGTTT

TTAGAAGACAAGCAGAAAACGTTAATAACTATTTAAATAAAGGTAGTTTAGCCGGCGTTGATGGTCGCTTACAATCACGT

AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACCGAAGTTGTATGCGACAGTGTTCAATTCCTTGAACCTAAGAA

CGCACAACATGGTGGCCAACGTTCACAAAACAATGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAATACGTCATATAATAACAATAACGCATCAAAATCTAATCAAAACGATAATCCATTTGCCAATGCTAATGGACCGATT

GATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.896	100	0.675
ssb	Latilactobacillus sakei subsp. sakei 23K	54.651	100	0.556
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.434	62.722	0.373
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361

Detailed information NTG0493320