Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INP89_RS09155 Genome accession   NZ_CP063127
Coordinates   1832453..1832959 (-) Length   168 a.a.
NCBI ID   WP_012054898.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M1C112_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1827453..1837959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP89_RS09570 - 1827476..1828102 (-) 627 WP_232086988.1 hypothetical protein -
  INP89_RS09140 (INP89_09135) - 1828167..1829504 (-) 1338 WP_225732519.1 hypothetical protein -
  INP89_RS09575 - 1829508..1830215 (-) 708 WP_225732520.1 site-specific integrase -
  INP89_RS09580 - 1830280..1831038 (-) 759 WP_225732521.1 hypothetical protein -
  INP89_RS09150 (INP89_09145) - 1831016..1832305 (-) 1290 WP_197541642.1 site-specific integrase -
  INP89_RS09155 (INP89_09150) ssb 1832453..1832959 (-) 507 WP_012054898.1 single-stranded DNA-binding protein Machinery gene
  INP89_RS09160 (INP89_09155) uvrA 1833114..1835945 (+) 2832 WP_197541643.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18837.66 Da        Isoelectric Point: 5.2733

>NTDB_id=493252 INP89_RS09155 WP_012054898.1 1832453..1832959(-) (ssb) [Haemophilus influenzae strain M1C112_1]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGFSNEMGSSPQPSYQARQTNNGNSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=493252 INP89_RS09155 WP_012054898.1 1832453..1832959(-) (ssb) [Haemophilus influenzae strain M1C112_1]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTTCTCTAATGAGATGGGATCTTCACCACAACCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.956

100

0.732
  ssb Vibrio cholerae strain A1552

56.425

100

0.601
  ssb Neisseria meningitidis MC58

51.445

100

0.53
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518