Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INP97_RS00270 Genome accession   NZ_CP063113
Coordinates   55266..55943 (+) Length   225 a.a.
NCBI ID   WP_197562689.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50266..60943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS00245 (INP97_00245) rppH 50556..51018 (-) 463 Protein_48 RNA pyrophosphohydrolase -
  INP97_RS00250 (INP97_00250) ampD 51514..52065 (-) 552 WP_197562686.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  INP97_RS00255 (INP97_00255) pilA 52208..52651 (+) 444 WP_065243023.1 prepilin peptidase-dependent pilin Machinery gene
  INP97_RS00260 (INP97_00260) pilB 52658..54037 (+) 1380 WP_197562687.1 GspE/PulE family protein Machinery gene
  INP97_RS00265 (INP97_00265) pilC 54046..55269 (+) 1224 WP_197562688.1 type II secretion system F family protein Machinery gene
  INP97_RS00270 (INP97_00270) pilD 55266..55943 (+) 678 WP_197562689.1 prepilin peptidase Machinery gene
  INP97_RS00275 (INP97_00275) coaE 56032..56652 (+) 621 WP_049369503.1 dephospho-CoA kinase -
  INP97_RS00280 (INP97_00280) yacG 56645..56851 (+) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  INP97_RS00285 (INP97_00285) - 56848..57129 (+) 282 WP_014064065.1 GNAT family N-acetyltransferase -
  INP97_RS00290 (INP97_00290) rhlB 57220..58479 (+) 1260 WP_049369584.1 ATP-dependent RNA helicase RhlB -
  INP97_RS00295 (INP97_00295) mreD 58521..59009 (-) 489 WP_049364929.1 rod shape-determining protein MreD -
  INP97_RS00300 (INP97_00300) mreC 59009..60073 (-) 1065 WP_049369504.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26071.03 Da        Isoelectric Point: 7.3415

>NTDB_id=492970 INP97_RS00270 WP_197562689.1 55266..55943(+) (pilD) [Haemophilus parainfluenzae strain M1C147_1]
MMTFAFFLLGGLAGIFAWLYIVRFIPNLQQEIYQNYIELYPENRPIFHSEKAAIQSQKCGHIFLYFLGFGLCFAALYYFL
QDELFTLWLAITLSLIFVISWLDWHYQLISPTPCLFLFFLGLFGAHQKLSILTLSQSLESAVSFFGVFYIIYHLSKWFYK
KEALGRGDYWLALGIGTYLTIEHLPLFLFIACLLGIIGYWISRKPVLPFAPFLCLSLIITSAINL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=492970 INP97_RS00270 WP_197562689.1 55266..55943(+) (pilD) [Haemophilus parainfluenzae strain M1C147_1]
ATGATGACATTCGCCTTTTTCTTATTGGGTGGTTTAGCGGGCATCTTTGCTTGGCTTTATATCGTTCGTTTTATTCCTAA
TCTCCAACAAGAAATTTATCAGAACTATATCGAACTGTATCCTGAAAACAGGCCCATTTTCCATAGCGAAAAAGCAGCGA
TTCAATCTCAAAAGTGCGGTCATATTTTCCTTTATTTTTTAGGGTTTGGACTCTGTTTTGCTGCACTCTATTATTTTCTT
CAGGATGAATTATTTACTTTATGGCTCGCGATTACGCTTAGTCTCATCTTTGTTATCAGTTGGCTAGACTGGCACTATCA
ACTGATTTCACCTACACCTTGCCTGTTTTTATTTTTCCTGGGTTTATTCGGCGCACATCAAAAACTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCGGTGTTTTTTATATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGCCGTGGCGATTATTGGCTTGCTTTGGGAATCGGCACTTATCTCACCATCGAGCACTTACCACTTTT
CTTATTCATTGCCTGTCTATTAGGCATCATAGGTTATTGGATTTCTCGTAAACCTGTTTTACCTTTTGCGCCCTTTCTTT
GCTTATCGTTAATCATCACCAGTGCAATCAACCTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

53.394

98.222

0.524
  pilD Haemophilus influenzae 86-028NP

52.489

98.222

0.516