Detailed information NTG0492942

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: INP98_RS01480
• Genome accession: NZ_CP063112
• Coordinates: 305051..306433 (-)
• Length: 460 a.a.
• NCBI ID: WP_049369641.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C149_1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 300051..311433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP98_RS01455 (INP98_01455)	-	300343..301212 (-)	870	WP_197570153.1	VirK/YbjX family protein	-
INP98_RS01460 (INP98_01460)	yihA	301326..301940 (+)	615	WP_032822378.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
INP98_RS01465 (INP98_01465)	comM	302070..303599 (+)	1530	WP_197570154.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
INP98_RS01470 (INP98_01470)	nfuA	303643..304227 (-)	585	WP_197545166.1	Fe-S biogenesis protein NfuA	-
INP98_RS01475 (INP98_01475)	-	304342..305031 (-)	690	WP_197570155.1	ComF family protein	-
INP98_RS01480 (INP98_01480)	comE	305051..306433 (-)	1383	WP_049369641.1	type IV pilus secretin PilQ	Machinery gene
INP98_RS01485 (INP98_01485)	-	306435..306818 (-)	384	WP_049369639.1	pilus assembly protein PilP	-
INP98_RS01490 (INP98_01490)	-	306818..307360 (-)	543	WP_049369637.1	hypothetical protein	-
INP98_RS01495 (INP98_01495)	-	307357..307869 (-)	513	WP_197570156.1	PilN domain-containing protein	-
INP98_RS01500 (INP98_01500)	-	307856..308704 (-)	849	WP_049369634.1	pilus assembly protein PilM	-
INP98_RS01505 (INP98_01505)	-	308804..310654 (+)	1851	Protein_283	penicillin-binding protein 1A	-
INP98_RS09770	-	310730..311422 (+)	693	Protein_284	penicillin-binding protein 1A	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 50967.58 Da
• Isoelectric Point: 7.5107

>NTDB_id=492942 INP98_RS01480 WP_049369641.1 305051..306433(-) (comE) [Haemophilus parainfluenzae strain M1C149_1]
MVKQKIKTKCGQFLMCFLILWTTYSAAENRVFSLRLKQAPMVATLQQVALEQNANLMIDDELEGTLSLQLDNVDFDRLLR
SVAKIKGLSFYQENNIYYLGKPSQHEQYAEKMTEPMAISGEGLPSETPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
TIAFDDRSNVLLIQDDARSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVGGSLDANGFS
NISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHFKQVEKVKK

Nucleotide

• Length: 1383 bp

>NTDB_id=492942 INP98_RS01480 WP_049369641.1 305051..306433(-) (comE) [Haemophilus parainfluenzae strain M1C149_1]
ATGGTAAAGCAGAAAATAAAAACAAAGTGCGGTCAGTTTTTAATGTGTTTTTTGATCCTATGGACAACGTACTCAGCGGC
AGAAAATCGCGTCTTTTCACTTCGATTAAAACAGGCGCCAATGGTAGCAACTCTCCAGCAGGTTGCTCTTGAGCAAAATG
CCAATTTAATGATTGATGATGAGCTAGAAGGAACGCTTTCATTGCAATTAGATAACGTGGATTTTGATCGTTTATTGCGT
TCTGTGGCAAAAATCAAAGGGCTCTCTTTTTATCAAGAAAATAATATTTATTATTTGGGTAAGCCTTCTCAACATGAACA
ATATGCAGAGAAAATGACAGAACCTATGGCAATTAGCGGAGAAGGTTTGCCTAGTGAAACACCACTTGTGAGTACAACGG
TTAAACTGCATTTTGCCAAGGCCTCTGATGTGATGAAATCTTTAACAACTGGTAGTGGTTCTTTGCTTTCACCTAGCGGC
ACGATTGCATTTGATGACCGAAGCAATGTATTACTGATTCAGGATGATGCACGTTCTGTCAAAAATATCAAAAAGTTAAT
CGCAGAGTTGGATAAACCCATTGAGCAAATCGTGATTGAGGCACGTATTGTGACGATTACTGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGCATTTTTAATCCTACTGAGGCAGCCCATCGAGTGGGTGGCAGTTTAGATGCGAACGGGTTTAGC
AATATCAGTAATAATTTAAATGTGAATTTTGCGACAACGGTCACGCCAGCTGGCTCATTAGCTCTTCAAGTAGCTAAAAT
TAATGGTCGATTATTAGACCTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGCTTAC
TTACTACCAACAAGAAAAGCGCAAGCATCAAACAAGGGACAGAAATTCCTTATGTGGTGACAAATGGGAAAAATGACACT
CAATCAGTGGAATTTCGAGAAGCGGTGTTGGGATTAGAAGTGACACCACATATTTCGAAGGATAATAATATTTTATTGGA
TTTATTAGTGAGTCAAAATTCTCCAGGGAATCGAGTGGCTTATGGGCAAAATGAAGTGGTATCCATTGATAAACAAGAAA
TTAATACGCAAGTGTTTGCCAAAGATGGCGAAACAATTGTATTAGGTGGTGTATTTCACGATACGATCACGAAAGGTGTC
GATAAAGTACCATTATTGGGCGATATTCCAGGTATTAAGCGCTTATTTAGTAAGGAAAGTGAACGTCATCAAAAACGCGA
ACTCGTCATTTTTGTGACACCTCATATTTTAAAACAAGGTGAAAGAATGGAAATGGCTAAGAAAGAAAAGCATTTTAAGC
AAGTTGAAAAAGTGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

• Bacterial type II and III secretion system protein (Secretin) (278-438)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.274	97.609	0.715
comE	Haemophilus influenzae 86-028NP	72.383	97.609	0.707
comE	Glaesserella parasuis strain SC1401	54.137	91.957	0.498
pilQ	Vibrio campbellii strain DS40M4	41.667	93.913	0.391
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	42.217	92.174	0.389
pilQ	Vibrio cholerae strain A1552	42.217	92.174	0.389