Detailed information NTG0492861

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: A0071_RS03180
• Genome accession: NZ_CP063091
• Coordinates: 645820..647235 (-)
• Length: 471 a.a.
• NCBI ID: WP_027304967.1
• Uniprot ID: -
• Organism: Campylobacter cuniculorum strain 2010D-8469
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 640820..652235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A0071_RS03160 (A0071_03160)	ctsF	641829..643016 (-)	1188	WP_027304963.1	type II secretion system F family protein	Machinery gene
A0071_RS03165 (A0071_03165)	ctsE	643013..644623 (-)	1611	WP_035175584.1	GspE/PulE family protein	Machinery gene
A0071_RS03170 (A0071_03170)	-	644620..645210 (-)	591	WP_027304965.1	CDC27 family protein	-
A0071_RS03175 (A0071_03175)	ctsP	645213..645827 (-)	615	WP_027304966.1	ATP-binding protein	Machinery gene
A0071_RS03180 (A0071_03180)	ctsD	645820..647235 (-)	1416	WP_027304967.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
A0071_RS03185 (A0071_03185)	-	647213..647548 (-)	336	WP_051521659.1	hypothetical protein	-
A0071_RS03190 (A0071_03190)	nifJ	647552..651112 (-)	3561	WP_027304969.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
A0071_RS03195 (A0071_03195)	-	651221..651862 (-)	642	WP_027304970.1	HAD family hydrolase	-

Sequence

Protein

• Length: 471 a.a.
• Molecular weight: 53100.64 Da
• Isoelectric Point: 5.5765

>NTDB_id=492861 A0071_RS03180 WP_027304967.1 645820..647235(-) (ctsD) [Campylobacter cuniculorum strain 2010D-8469]
MIKFILIKLCFFTIFLYGIEDCQKKLFNININENLSIEESLGELANYCSFSIVIKDEFAREKLLTNQNNIHIHQMNLDEI
FKLFITENDLGYEFDGKVLKISALQTKIFKISYITSVREGQSITKASVDAKPKQNEFSQNEDIEDNMIKSMEKFDFWQNI
ENEINALLISTKGYESKAIINPNAGIITIIGTNSQLQKVKNYLQKLEYRLKKQAIIDVSIIAVSLNKKHSSGINWQNFNL
GLNSTNSDGSGSFIQLQSGQGFVKNLGLRADLNFDSVLNFLSQSGKTKVLSNPKLMALNNQQAIISVGDTINYQIKESSK
GTENGSTVSESFNNYSIFIGILLNILPEISDDDKIMLRINPSLSDFKYPEDNVKQKEPRTIAPDTIQKKLSTVVQVENNQ
TLILGGLISHNQTQDDSSVNFLSKIPLLGLFFKGSNELSQATEIVFIITPSIIDNIKNTPSLKDLGFRYYE

Nucleotide

• Length: 1416 bp

>NTDB_id=492861 A0071_RS03180 WP_027304967.1 645820..647235(-) (ctsD) [Campylobacter cuniculorum strain 2010D-8469]
ATGATAAAATTTATATTGATTAAGCTTTGTTTTTTTACGATTTTTCTTTATGGCATAGAAGATTGTCAAAAAAAGCTTTT
TAATATTAATATCAACGAAAATTTAAGCATAGAAGAAAGCTTAGGAGAATTGGCGAATTATTGCTCTTTTAGCATAGTCA
TCAAGGACGAATTTGCTAGAGAAAAACTTTTAACAAATCAAAACAATATCCATATCCACCAAATGAATCTTGATGAAATT
TTTAAGCTTTTTATCACAGAAAATGACCTTGGCTATGAATTTGATGGCAAGGTTCTTAAAATTTCAGCCCTTCAAACAAA
GATTTTTAAAATCAGCTATATCACTTCAGTACGTGAAGGACAAAGCATCACAAAGGCTTCAGTCGATGCAAAACCTAAGC
AAAATGAATTCAGTCAAAACGAAGATATAGAGGATAATATGATTAAGAGTATGGAAAAATTCGATTTTTGGCAAAATATA
GAAAATGAAATCAATGCTCTTTTAATCTCCACAAAGGGTTATGAAAGTAAAGCCATCATCAATCCAAATGCAGGTATCAT
CACAATAATAGGCACAAATTCTCAACTTCAAAAAGTTAAAAACTATCTCCAAAAACTTGAATACAGACTTAAAAAACAAG
CCATTATCGATGTGAGTATTATCGCGGTATCTTTAAATAAAAAGCATTCTAGTGGGATTAATTGGCAAAATTTTAACTTA
GGTTTAAATTCTACAAATTCAGACGGAAGTGGTTCTTTCATTCAACTTCAAAGCGGACAAGGTTTTGTAAAAAATCTAGG
CTTAAGGGCGGATTTAAATTTTGATTCTGTTCTTAATTTTCTTTCACAAAGTGGAAAAACTAAGGTTTTATCTAATCCTA
AGCTTATGGCACTGAATAACCAACAAGCCATTATTTCTGTTGGAGATACAATCAACTATCAAATCAAAGAAAGTTCTAAA
GGCACTGAAAACGGCTCAACAGTGAGCGAAAGTTTTAATAATTATTCTATTTTCATAGGAATTTTACTCAATATCCTGCC
TGAAATTTCGGATGATGATAAAATTATGCTAAGAATTAATCCTAGTTTGAGTGATTTTAAATATCCCGAAGACAATGTCA
AACAAAAAGAGCCTCGCACTATAGCACCAGATACCATACAAAAAAAGCTTTCCACCGTCGTGCAGGTTGAAAACAACCAA
ACTCTAATCTTAGGAGGTCTCATCTCTCATAACCAAACTCAAGACGATTCTTCTGTGAATTTCTTGTCTAAAATTCCGCT
TCTTGGCTTATTTTTCAAAGGCTCAAATGAATTATCTCAAGCAACTGAAATTGTTTTTATCATCACTCCAAGCATTATTG
ATAATATCAAAAATACTCCCTCTCTTAAGGATTTAGGATTTAGATATTATGAGTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	74.895	100	0.754