Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   A0071_RS03175 Genome accession   NZ_CP063091
Coordinates   645213..645827 (-) Length   204 a.a.
NCBI ID   WP_027304966.1    Uniprot ID   A0A1W6BUG6
Organism   Campylobacter cuniculorum strain 2010D-8469     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640213..650827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0071_RS09850 - 640537..641217 (-) 681 Protein_624 cache domain-containing protein -
  A0071_RS03160 (A0071_03160) ctsF 641829..643016 (-) 1188 WP_027304963.1 type II secretion system F family protein Machinery gene
  A0071_RS03165 (A0071_03165) ctsE 643013..644623 (-) 1611 WP_035175584.1 GspE/PulE family protein Machinery gene
  A0071_RS03170 (A0071_03170) - 644620..645210 (-) 591 WP_027304965.1 CDC27 family protein -
  A0071_RS03175 (A0071_03175) ctsP 645213..645827 (-) 615 WP_027304966.1 ATP-binding protein Machinery gene
  A0071_RS03180 (A0071_03180) ctsD 645820..647235 (-) 1416 WP_027304967.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A0071_RS03185 (A0071_03185) - 647213..647548 (-) 336 WP_051521659.1 hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23980.06 Da        Isoelectric Point: 10.2177

>NTDB_id=492860 A0071_RS03175 WP_027304966.1 645213..645827(-) (ctsP) [Campylobacter cuniculorum strain 2010D-8469]
MSEFVSIQSQERVLSRIKELLKQKSFILLLGQSGSGKTALLRQLCKEFKALHKTQIFKNQKEFQNFIEPVLQSESKPIVL
LDEVGMYDERTLESIRIYSDDLSFVLSSHKKPKIFNKEHFKSRFQAEFKLKNLDFGELKDYIKIKHGLDFFPKELKLIYK
IYQGNLRNIDKMLKSFKELHSFYKGQKSVKYILNLSAFENALLG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=492860 A0071_RS03175 WP_027304966.1 645213..645827(-) (ctsP) [Campylobacter cuniculorum strain 2010D-8469]
ATGAGTGAATTTGTAAGCATACAAAGTCAAGAAAGGGTTTTATCAAGGATTAAAGAGCTTTTAAAGCAAAAGAGTTTCAT
TTTGCTTTTAGGTCAAAGTGGAAGTGGTAAAACCGCACTTCTTAGACAGCTTTGCAAGGAATTTAAAGCCTTGCATAAGA
CTCAAATTTTTAAAAATCAAAAAGAATTTCAAAATTTTATAGAGCCCGTTTTACAAAGTGAAAGCAAACCTATTGTTTTA
CTCGATGAAGTGGGAATGTATGATGAAAGAACTCTTGAAAGCATAAGAATTTATAGTGATGACTTAAGTTTTGTTTTAAG
TTCTCATAAAAAACCTAAAATCTTTAACAAGGAGCATTTTAAAAGCCGCTTTCAAGCAGAATTTAAACTTAAGAATTTGG
ACTTTGGGGAGCTTAAGGATTATATAAAAATTAAACATGGGCTTGATTTTTTTCCAAAAGAATTGAAATTAATTTATAAA
ATTTATCAAGGAAATCTAAGAAATATCGACAAAATGCTTAAGAGTTTTAAAGAGCTTCACAGCTTTTACAAGGGGCAAAA
AAGTGTAAAATATATTTTAAATTTAAGTGCTTTTGAAAATGCTTTGTTAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(27-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6BUG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

53.333

95.588

0.51