Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   A0071_RS03165 Genome accession   NZ_CP063091
Coordinates   643013..644623 (-) Length   536 a.a.
NCBI ID   WP_035175584.1    Uniprot ID   A0A1W6BUG2
Organism   Campylobacter cuniculorum strain 2010D-8469     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 638013..649623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0071_RS03150 (A0071_03150) - 638133..638978 (-) 846 WP_027304961.1 fumarate hydratase -
  A0071_RS09845 - 639283..640497 (-) 1215 WP_415270574.1 methyl-accepting chemotaxis protein -
  A0071_RS09850 - 640537..641217 (-) 681 Protein_624 cache domain-containing protein -
  A0071_RS03160 (A0071_03160) ctsF 641829..643016 (-) 1188 WP_027304963.1 type II secretion system F family protein Machinery gene
  A0071_RS03165 (A0071_03165) ctsE 643013..644623 (-) 1611 WP_035175584.1 GspE/PulE family protein Machinery gene
  A0071_RS03170 (A0071_03170) - 644620..645210 (-) 591 WP_027304965.1 CDC27 family protein -
  A0071_RS03175 (A0071_03175) ctsP 645213..645827 (-) 615 WP_027304966.1 ATP-binding protein Machinery gene
  A0071_RS03180 (A0071_03180) ctsD 645820..647235 (-) 1416 WP_027304967.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A0071_RS03185 (A0071_03185) - 647213..647548 (-) 336 WP_051521659.1 hypothetical protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 62170.17 Da        Isoelectric Point: 7.8190

>NTDB_id=492859 A0071_RS03165 WP_035175584.1 643013..644623(-) (ctsE) [Campylobacter cuniculorum strain 2010D-8469]
MREFLSKLGFSGGNFDFKDVKCQEFLFDLYLKDKLSLDELYLKLGLESEEFLKTLAKYYKMEFLSFENYDENFKLPLNLL
LEFKILPIKTDEENVYIARAKPFSLELLERIQSLFRDKFVKAVISDCFKISKALNRLRIKEELKNLSFQLKEEWEDNFKQ
ENQSSVSKIFDFILKEALNLNSSDIHIESRKNDALIRFRVDGELQFFCILEKEIYQALVFHIKFLTHLNVAEQRKAQDGN
FELKLENQNYDFRVSTLPLIYGESVVLRILKHDEKFLELKNLNFLDSHLKALQKAISSSYGMILITGATGSGKSTTLYAC
LNALKSIKKKIITAEDPIEYKMQGIQQILLNPKAGLEFNNALRAILRQDPDIIMIGEIRDEQSLDIAIKSSLTGHLLLST
LHTNDSISTIDRLLDMKAKPYLIAQALSLIVAQRLVRKLCIFCKRKSEKKYTLFQGQFYESRGCEHCNYSGYSGRDLVAE
FLVIDENLKELIRENVGKKRILEYARKQGFQTMLECGLQKAKEGLTSIEELQRVLD

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=492859 A0071_RS03165 WP_035175584.1 643013..644623(-) (ctsE) [Campylobacter cuniculorum strain 2010D-8469]
ATGAGAGAATTTTTATCCAAACTTGGTTTTAGTGGTGGAAATTTTGATTTTAAGGATGTAAAATGTCAAGAGTTTTTATT
TGATTTGTATCTTAAAGACAAGCTTAGTTTAGATGAGCTTTATTTAAAATTAGGTTTAGAGAGTGAGGAATTTTTAAAAA
CCTTAGCAAAATACTATAAAATGGAATTTCTAAGTTTTGAAAATTATGATGAAAATTTCAAATTACCTTTAAATTTGCTC
TTGGAATTTAAAATTCTGCCGATAAAAACCGATGAAGAAAATGTCTATATTGCAAGAGCTAAACCTTTTTCTTTAGAGCT
TTTAGAGAGAATACAAAGCCTTTTTAGAGATAAATTTGTCAAAGCTGTTATAAGTGATTGTTTTAAAATTTCTAAAGCAT
TAAATCGTCTGCGCATCAAAGAGGAGCTTAAAAATTTAAGCTTTCAACTTAAGGAGGAATGGGAGGATAATTTCAAACAA
GAAAATCAAAGTTCAGTCAGCAAAATTTTTGATTTTATCCTTAAAGAAGCTTTGAATTTAAATTCAAGTGATATTCACAT
AGAATCAAGAAAAAATGACGCTTTGATAAGATTTAGAGTCGATGGAGAACTTCAATTTTTTTGTATTTTAGAAAAAGAAA
TTTATCAAGCCTTAGTTTTTCACATCAAATTTTTAACCCATTTAAATGTAGCCGAGCAACGCAAGGCTCAAGATGGAAAT
TTTGAGCTAAAACTAGAAAATCAAAATTATGATTTTAGAGTTTCCACCCTGCCTTTAATCTACGGGGAAAGCGTTGTTTT
AAGGATACTTAAACATGATGAGAAATTTTTAGAGCTTAAGAATTTAAATTTCTTAGATTCTCATTTAAAAGCACTTCAAA
AGGCTATTTCTTCCTCTTATGGTATGATTTTAATCACAGGGGCAACAGGAAGTGGCAAAAGTACCACCTTGTATGCGTGT
TTAAATGCCTTAAAATCGATAAAGAAAAAGATTATCACAGCGGAGGATCCTATAGAATACAAAATGCAAGGGATACAACA
AATTTTACTCAATCCTAAAGCGGGATTAGAATTTAACAATGCTTTAAGAGCCATTTTAAGACAGGATCCGGATATTATAA
TGATTGGTGAAATTCGCGATGAGCAAAGCCTTGATATAGCCATCAAATCCTCTCTTACAGGACATTTGCTTTTAAGCACT
TTGCATACAAATGATAGCATCAGCACAATAGACAGACTTTTGGATATGAAAGCAAAACCTTATCTTATCGCACAGGCTTT
GAGTTTAATTGTGGCTCAAAGACTTGTAAGAAAACTCTGCATTTTTTGCAAAAGAAAAAGTGAGAAAAAATACACTTTAT
TTCAGGGACAATTCTATGAAAGTAGGGGCTGTGAGCATTGCAATTATAGCGGTTATTCGGGTAGGGATTTGGTGGCAGAA
TTTTTAGTGATTGATGAGAATTTAAAAGAGCTTATCCGTGAAAATGTAGGCAAAAAAAGGATTTTAGAATACGCTAGAAA
ACAAGGCTTTCAAACTATGTTAGAATGCGGTTTGCAAAAGGCTAAGGAAGGATTAACAAGCATTGAAGAGCTTCAAAGGG
TGTTGGATTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(45-142)

Type II/IV secretion system protein (T2SSE)

(173-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6BUG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

60.039

95.709

0.575