Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IMX23_RS00200 Genome accession   NZ_CP063071
Coordinates   42765..43307 (+) Length   180 a.a.
NCBI ID   WP_003744970.1    Uniprot ID   -
Organism   Listeria seeligeri strain Sr73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 37765..48307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX23_RS00175 (IMX23_00175) aguA 38157..39266 (+) 1110 WP_196318772.1 agmatine deiminase -
  IMX23_RS00180 (IMX23_00180) - 39284..40063 (+) 780 WP_003744965.1 MurR/RpiR family transcriptional regulator -
  IMX23_RS00185 (IMX23_00185) - 40167..40826 (+) 660 WP_003750454.1 DedA family protein -
  IMX23_RS00190 (IMX23_00190) arcA 40911..42134 (+) 1224 WP_414627911.1 arginine deiminase -
  IMX23_RS00195 (IMX23_00195) rpsF 42415..42708 (+) 294 WP_003718123.1 30S ribosomal protein S6 -
  IMX23_RS00200 (IMX23_00200) ssbA 42765..43307 (+) 543 WP_003744970.1 single-stranded DNA-binding protein Machinery gene
  IMX23_RS00205 (IMX23_00205) rpsR 43350..43589 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  IMX23_RS00210 (IMX23_00210) - 43743..44354 (+) 612 WP_003750463.1 PepSY domain-containing protein -
  IMX23_RS00215 (IMX23_00215) - 44609..45223 (+) 615 WP_185477953.1 accessory gene regulator ArgB-like protein -
  IMX23_RS00220 (IMX23_00220) - 45207..45368 (+) 162 WP_003745028.1 cyclic lactone autoinducer peptide -
  IMX23_RS00225 (IMX23_00225) - 45460..46755 (+) 1296 WP_196318773.1 sensor histidine kinase -
  IMX23_RS00230 (IMX23_00230) - 46774..47502 (+) 729 WP_196318774.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19683.34 Da        Isoelectric Point: 4.9264

>NTDB_id=492687 IMX23_RS00200 WP_003744970.1 42765..43307(+) (ssbA) [Listeria seeligeri strain Sr73]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNSGGGNNYQGGNTTNNSNYNNGGNNFGQAPTNNGGFAQDQQQSQNQNHQSTN
NDPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=492687 IMX23_RS00200 WP_003744970.1 42765..43307(+) (ssbA) [Listeria seeligeri strain Sr73]
ATGATGAATCGTGTTGTACTCGTAGGACGCTTAACTAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACACTTGCTGTAAATCGTACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGACGGCCGCGTTCAAACTCGT
AATTACGAGGGAAATGACGGTAAACGTGTTTATGTGACAGAAATTGTGGCTGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATAGCGGCGGCGGAAATAACTATCAAGGTGGCAATACTACTAACAACAGTAATTATAATAATGGTGGAAATAATT
TCGGACAAGCACCTACTAATAACGGTGGATTCGCACAGGACCAGCAACAATCTCAAAATCAAAATCATCAATCCACTAAC
AATGATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65

100

0.65
  ssb Latilactobacillus sakei subsp. sakei 23K

54.054

100

0.556
  ssb Glaesserella parasuis strain SC1401

35.484

100

0.367
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

58.889

0.361