Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INP81_RS24040 Genome accession   NZ_CP063057
Coordinates   5224588..5225136 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas thiooxydans strain ZDHYF418     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5219588..5230136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP81_RS24005 - 5219932..5220108 (-) 177 WP_197577531.1 hypothetical protein -
  INP81_RS24010 - 5220119..5220283 (-) 165 WP_197577532.1 hypothetical protein -
  INP81_RS24015 - 5220391..5220585 (-) 195 WP_197577533.1 hypothetical protein -
  INP81_RS24020 - 5220569..5220817 (-) 249 WP_197577534.1 hypothetical protein -
  INP81_RS24025 (INP81_24010) - 5221138..5222805 (-) 1668 WP_197577535.1 PglL family O-oligosaccharyltransferase -
  INP81_RS24030 (INP81_24015) - 5222882..5223364 (-) 483 WP_197577536.1 pilin -
  INP81_RS24035 (INP81_24020) - 5223552..5224271 (-) 720 WP_197577537.1 FHA domain-containing protein -
  INP81_RS24040 (INP81_24025) ssb 5224588..5225136 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  INP81_RS24045 (INP81_24030) - 5225398..5226570 (-) 1173 WP_034407033.1 MFS transporter -
  INP81_RS24050 (INP81_24035) uvrA 5226797..5229865 (+) 3069 WP_197577538.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=492634 INP81_RS24040 WP_003064700.1 5224588..5225136(-) (ssb) [Comamonas thiooxydans strain ZDHYF418]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=492634 INP81_RS24040 WP_003064700.1 5224588..5225136(-) (ssb) [Comamonas thiooxydans strain ZDHYF418]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGAGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCAAACTGGCCGAAATCGTGGGCCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAAGAACGCTACGCCACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGCGGTGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCG
CCCATGGCTCCTCCTCCCCAGCGCGCAGCTTCGGGGTTTGACGACATGGATGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451