Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IHV77_RS08485 Genome accession   NZ_CP063056
Coordinates   1779325..1779828 (-) Length   167 a.a.
NCBI ID   WP_194811536.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1774325..1784828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS08470 (IHV77_08470) plsB 1774861..1777287 (-) 2427 WP_194811533.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  IHV77_RS08475 (IHV77_08475) lexA 1777446..1778072 (+) 627 WP_194811534.1 transcriptional repressor LexA -
  IHV77_RS08480 (IHV77_08480) dapF 1778213..1779037 (+) 825 WP_194811535.1 diaminopimelate epimerase -
  IHV77_RS08485 (IHV77_08485) ssb 1779325..1779828 (-) 504 WP_194811536.1 single-stranded DNA-binding protein Machinery gene
  IHV77_RS08490 (IHV77_08490) uvrA 1779983..1782814 (+) 2832 WP_194811537.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18774.61 Da        Isoelectric Point: 5.2649

>NTDB_id=492612 IHV77_RS08485 WP_194811536.1 1779325..1779828(-) (ssb) [Rodentibacter haemolyticus strain DSM 111151]
MAGVNKVIIVGHLGNDPEVRTMPNGDAVANISVATSESWNDRNTGERREITEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGAPDMGQSTPQPAYQARSNNNYQSSRPAQQQPAPQAEPPMDG
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=492612 IHV77_RS08485 WP_194811536.1 1779325..1779828(-) (ssb) [Rodentibacter haemolyticus strain DSM 111151]
ATGGCTGGAGTAAATAAGGTCATCATCGTGGGTCATTTAGGTAATGACCCGGAAGTTCGCACTATGCCAAATGGTGATGC
CGTGGCAAACATTAGCGTAGCAACAAGTGAAAGTTGGAATGACCGCAACACCGGCGAACGTCGTGAAATAACGGAATGGC
ATCGTATTGTATTTTATCGCCGCCAAGCTGAAATCTGCGGTGAATACTTACGCAAAGGCTCACAAGTTTATGTTGAAGGG
CGTTTACGCACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACAGAAATTCAAGGTGATGTGATGCAAAT
GCTAGGCGGACGTAATCAAAACGCAGGTGGCTACGGCGCACCGGATATGGGACAAAGTACTCCGCAACCAGCTTACCAAG
CGCGTTCAAACAATAACTATCAATCATCCCGCCCTGCCCAACAGCAACCGGCCCCACAAGCCGAGCCGCCAATGGACGGC
TTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.667

100

0.719
  ssb Vibrio cholerae strain A1552

58.046

100

0.605
  ssb Neisseria meningitidis MC58

51.429

100

0.539
  ssb Neisseria gonorrhoeae MS11

51.429

100

0.539