Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IHV77_RS07735 Genome accession   NZ_CP063056
Coordinates   1634451..1635575 (+) Length   374 a.a.
NCBI ID   WP_194811412.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1629451..1640575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS07715 (IHV77_07715) leuB 1629585..1630661 (-) 1077 WP_194811409.1 3-isopropylmalate dehydrogenase -
  IHV77_RS07720 (IHV77_07720) leuA 1630705..1632252 (-) 1548 WP_194811410.1 2-isopropylmalate synthase -
  IHV77_RS07725 (IHV77_07725) - 1632902..1633156 (+) 255 WP_194811411.1 hypothetical protein -
  IHV77_RS12060 - 1633318..1633434 (-) 117 WP_232842167.1 hypothetical protein -
  IHV77_RS11960 - 1633557..1633682 (-) 126 WP_269902538.1 hypothetical protein -
  IHV77_RS07735 (IHV77_07735) dprA 1634451..1635575 (+) 1125 WP_194811412.1 DNA-processing protein DprA Machinery gene
  IHV77_RS07740 (IHV77_07740) yaaA 1635617..1636393 (+) 777 WP_194811413.1 peroxide stress protein YaaA -
  IHV77_RS07745 (IHV77_07745) - 1636386..1636967 (+) 582 WP_194811414.1 hypothetical protein -
  IHV77_RS07750 (IHV77_07750) pfkA 1637088..1638053 (+) 966 WP_194811415.1 6-phosphofructokinase -
  IHV77_RS07755 (IHV77_07755) yceD 1638296..1638820 (+) 525 WP_194811416.1 23S rRNA accumulation protein YceD -
  IHV77_RS07760 (IHV77_07760) rpmF 1638843..1639013 (+) 171 WP_005544470.1 50S ribosomal protein L32 -
  IHV77_RS07765 (IHV77_07765) plsX 1639035..1640054 (+) 1020 WP_194811417.1 phosphate acyltransferase PlsX -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41900.20 Da        Isoelectric Point: 5.4323

>NTDB_id=492607 IHV77_RS07735 WP_194811412.1 1634451..1635575(+) (dprA) [Rodentibacter haemolyticus strain DSM 111151]
MVDNINETLLRLMQVPRLGGVAIDKILSNVTLNELLNYDKAAFEQMGWGAIQIRRWFKPERKFIDPVLAWVEEEGNHLVN
YFSPFYPFLLKQIASFPPLLFVKGNLTAISQRQMAMVGSRYCTAYGEYWAKYFATELSLAGFTITSGLALGIDGYCHKAV
VDIKGQTIAVLGSGLEEIYPAKHRSLAEQILCNDGALISEFMPHQPPVAANFPRRNRIISGLSVGTLVVEATEKSGSLIT
ARYALEQNREVFAVPGSIQSEFSQGCHRLIKQGAMLVENVKDVLETLYQHSIHSQTEIDFDQIETENYTPPPNPRRLVEA
PSHPKLYARIGYTPVSIDDLAQEFGLPVDVLLVQLLDLELQDLILSENGLYKRV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=492607 IHV77_RS07735 WP_194811412.1 1634451..1635575(+) (dprA) [Rodentibacter haemolyticus strain DSM 111151]
ATGGTCGATAATATTAATGAAACTTTGCTTCGTTTAATGCAAGTGCCAAGGCTTGGTGGGGTGGCGATTGATAAAATTTT
ATCGAATGTGACGTTAAATGAATTGTTGAATTACGATAAAGCAGCCTTTGAACAAATGGGTTGGGGGGCGATTCAAATTC
GCCGTTGGTTTAAACCGGAAAGAAAATTTATTGATCCCGTGTTGGCGTGGGTTGAAGAAGAAGGAAATCATTTGGTGAAT
TATTTTTCGCCTTTTTACCCTTTTTTGTTAAAGCAAATTGCGAGTTTTCCCCCTTTATTGTTTGTGAAAGGGAATCTTAC
GGCGATTTCTCAGCGGCAAATGGCAATGGTGGGCAGTCGCTATTGCACGGCTTACGGTGAATATTGGGCGAAATATTTTG
CAACGGAATTGTCACTGGCAGGCTTTACCATTACAAGTGGGCTGGCGCTTGGGATTGATGGCTATTGCCATAAGGCGGTG
GTGGATATTAAAGGGCAAACTATTGCGGTGTTGGGGAGTGGGCTTGAGGAAATTTATCCGGCGAAACATCGCTCATTAGC
GGAACAAATTTTGTGTAATGATGGGGCGTTAATTTCGGAATTTATGCCTCATCAACCACCTGTCGCGGCAAATTTTCCAC
GCCGAAATCGAATTATTAGCGGGCTTTCGGTGGGAACCTTAGTGGTTGAAGCCACAGAAAAAAGCGGTTCGCTTATCACG
GCACGTTATGCGTTGGAGCAAAATCGTGAAGTTTTTGCTGTACCGGGAAGTATTCAAAGTGAATTTAGTCAAGGTTGTCA
TCGCTTGATTAAACAAGGGGCTATGTTGGTGGAGAATGTGAAGGATGTTTTGGAGACGCTGTATCAACATTCCATTCATA
GTCAAACTGAGATCGATTTTGATCAAATTGAAACGGAAAATTATACGCCGCCGCCGAATCCACGCCGGTTGGTGGAAGCA
CCAAGCCACCCTAAACTTTACGCACGAATAGGTTATACGCCGGTTAGCATTGATGATTTGGCACAGGAATTCGGTTTGCC
TGTTGATGTGTTGCTGGTGCAACTGTTGGATTTGGAATTACAGGATTTGATTTTGAGCGAAAACGGTCTTTATAAACGTG
TGTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-367)

DNA recombination-mediator protein A (DNA_processg_A)

(71-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

85.255

99.733

0.85
  dprA Glaesserella parasuis strain SC1401

51.884

92.246

0.479
  dprA Vibrio campbellii strain DS40M4

43.75

98.396

0.43
  dprA Vibrio cholerae strain A1552

41.842

100

0.425
  dprA Legionella pneumophila strain ERS1305867

40.214

99.733

0.401