Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   IHV77_RS04635 Genome accession   NZ_CP063056
Coordinates   960914..961249 (-) Length   111 a.a.
NCBI ID   WP_194812943.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 955914..966249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS04615 (IHV77_04615) focA 956283..957134 (+) 852 WP_194812939.1 formate transporter FocA -
  IHV77_RS04620 (IHV77_04620) pflB 957184..959496 (+) 2313 WP_194812940.1 formate C-acetyltransferase -
  IHV77_RS04625 (IHV77_04625) pflA 959622..960362 (+) 741 WP_194812941.1 pyruvate formate lyase 1-activating protein -
  IHV77_RS04630 (IHV77_04630) - 960396..960863 (+) 468 WP_194812942.1 surface-adhesin E family protein -
  IHV77_RS04635 (IHV77_04635) comE1/comEA 960914..961249 (-) 336 WP_194812943.1 helix-hairpin-helix domain-containing protein Machinery gene
  IHV77_RS04640 (IHV77_04640) - 961411..962208 (+) 798 WP_194812944.1 helical backbone metal receptor -
  IHV77_RS04645 (IHV77_04645) - 962205..963173 (+) 969 WP_194812945.1 iron ABC transporter permease -
  IHV77_RS04650 (IHV77_04650) - 963170..963907 (+) 738 WP_194812946.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11783.49 Da        Isoelectric Point: 8.5546

>NTDB_id=492595 IHV77_RS04635 WP_194812943.1 960914..961249(-) (comE1/comEA) [Rodentibacter haemolyticus strain DSM 111151]
MKLIKTLISSLVLGSALVSSSVLAEEKAVEPLTAQTTTEKAPSADVGDKLNINTATASEIQKSLTGIGAKKAEAIVQYRE
KHGNFTSAEQLLEVQGIGKATLEKNRDRLAF

Nucleotide


Download         Length: 336 bp        

>NTDB_id=492595 IHV77_RS04635 WP_194812943.1 960914..961249(-) (comE1/comEA) [Rodentibacter haemolyticus strain DSM 111151]
ATGAAATTAATTAAAACCTTAATCAGCTCACTTGTTCTGGGAAGCGCATTAGTCAGTTCATCTGTTTTGGCAGAGGAAAA
AGCGGTAGAGCCCTTAACAGCACAAACAACAACCGAAAAAGCCCCTTCCGCCGATGTGGGTGATAAGTTAAATATTAACA
CTGCAACAGCAAGTGAAATCCAAAAATCCTTAACCGGTATTGGTGCCAAAAAAGCAGAGGCGATTGTACAATATCGTGAA
AAGCATGGTAATTTTACCTCAGCGGAGCAACTGCTTGAGGTTCAAGGTATCGGTAAAGCGACACTTGAAAAAAATCGTGA
TCGTTTGGCATTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

72.566

100

0.739
  comEA/comE1 Glaesserella parasuis strain SC1401

52.101

100

0.559
  comEA Vibrio cholerae C6706

41.818

99.099

0.414
  comEA Vibrio cholerae strain A1552

41.818

99.099

0.414