Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   IL982_RS04025 Genome accession   NZ_CP063049
Coordinates   784523..785047 (+) Length   174 a.a.
NCBI ID   WP_414477577.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Dl-1     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 779523..790047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL982_RS04005 (IL982_04005) lysM 780718..781146 (+) 429 WP_197573673.1 peptidoglycan-binding protein LysM -
  IL982_RS04010 (IL982_04010) - 781193..781645 (+) 453 WP_065172605.1 YidB family protein -
  IL982_RS04015 (IL982_04015) - 781753..782652 (-) 900 WP_086367186.1 lysine exporter LysO family protein -
  IL982_RS04020 (IL982_04020) - 782956..783870 (-) 915 WP_086367185.1 HDOD domain-containing protein -
  IL982_RS04025 (IL982_04025) tfoX 784523..785047 (+) 525 WP_414477577.1 TfoX/Sxy family DNA transformation protein Regulator
  IL982_RS04030 (IL982_04030) dsdC 785151..786083 (+) 933 WP_086367183.1 DNA-binding transcriptional regulator DsdC -
  IL982_RS04035 (IL982_04035) - 786102..787097 (-) 996 WP_065172601.1 2-hydroxyacid dehydrogenase -
  IL982_RS04040 (IL982_04040) - 787258..787758 (-) 501 WP_197573674.1 response regulator -
  IL982_RS04045 (IL982_04045) - 787936..789249 (+) 1314 WP_086367181.1 DUF945 family protein -
  IL982_RS04050 (IL982_04050) - 789428..789844 (+) 417 WP_065172670.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19831.99 Da        Isoelectric Point: 9.6148

>NTDB_id=492560 IL982_RS04025 WP_414477577.1 784523..785047(+) (tfoX) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
MFGGTGVFVDGAMYAIINNGRIFLRGGETLDDELIGLNCERFKHVKRRTTAIVNYYDITNIYLDNEPKCRDLINKSIQYA
CAERNIKFSEDSRRLRDLPNMRLTLERMVKKAGIPDVKSFMSLGAVEVYRKVRRSHGSGVDVKLLWIFAGAVDGCHWTLL
KDEQKSVLLKALNN

Nucleotide


Download         Length: 525 bp        

>NTDB_id=492560 IL982_RS04025 WP_414477577.1 784523..785047(+) (tfoX) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
ATGTTCGGTGGAACTGGTGTTTTTGTTGATGGTGCTATGTATGCCATTATTAATAACGGTCGAATTTTTTTACGAGGTGG
AGAAACGCTGGATGATGAATTGATAGGCTTAAACTGTGAAAGATTCAAGCATGTAAAACGTCGCACAACAGCCATCGTTA
ATTATTATGATATTACGAATATTTATCTTGATAATGAACCTAAATGCCGTGATTTAATCAATAAATCTATTCAATATGCA
TGTGCAGAACGCAACATTAAATTTTCTGAAGACAGCCGTCGTCTTCGTGATCTACCGAATATGCGTTTAACCTTAGAACG
TATGGTGAAAAAAGCTGGGATTCCAGATGTAAAGAGCTTTATGTCATTGGGGGCTGTTGAAGTATATCGTAAAGTTCGTC
GCTCTCATGGTAGTGGTGTTGATGTAAAATTATTATGGATTTTTGCTGGCGCTGTCGATGGATGCCACTGGACATTACTA
AAAGATGAGCAAAAATCAGTACTACTAAAAGCATTAAATAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(1-79)

TfoX C-terminal domain (TfoX_C)

(92-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

58.48

98.276

0.575
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

58.48

98.276

0.575
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

58.48

98.276

0.575
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

58.48

98.276

0.575
  tfoX Vibrio cholerae strain A1552

58.48

98.276

0.575
  tfoX Vibrio parahaemolyticus RIMD 2210633

56.213

97.126

0.546
  tfoX Vibrio campbellii strain DS40M4

56.213

97.126

0.546
  tfoX Aliivibrio fischeri ES114

50

98.851

0.494