Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IL982_RS00390 | Genome accession | NZ_CP063049 |
| Coordinates | 45369..45917 (+) | Length | 182 a.a. |
| NCBI ID | WP_044174221.1 | Uniprot ID | A0A1Q9H2L1 |
| Organism | Photobacterium damselae subsp. damselae strain KC-Dl-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 40369..50917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IL982_RS00380 (IL982_00380) | - | 40373..42124 (-) | 1752 | WP_086367576.1 | PglL family O-oligosaccharyltransferase | - |
| IL982_RS00385 (IL982_00385) | uvrA | 42277..45102 (-) | 2826 | WP_086367575.1 | excinuclease ABC subunit UvrA | - |
| IL982_RS00390 (IL982_00390) | ssb | 45369..45917 (+) | 549 | WP_044174221.1 | single-stranded DNA-binding protein | Machinery gene |
| IL982_RS00395 (IL982_00395) | csrD | 46068..48008 (+) | 1941 | WP_086367574.1 | RNase E specificity factor CsrD | - |
| IL982_RS00400 (IL982_00400) | - | 48224..49624 (+) | 1401 | WP_157756301.1 | PilN domain-containing protein | - |
| IL982_RS00405 (IL982_00405) | pilO | 49621..50256 (+) | 636 | WP_065170864.1 | type 4a pilus biogenesis protein PilO | - |
| IL982_RS00410 (IL982_00410) | - | 50249..50572 (+) | 324 | WP_065170863.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20101.25 Da Isoelectric Point: 4.9059
>NTDB_id=492543 IL982_RS00390 WP_044174221.1 45369..45917(+) (ssb) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
MASRGVNKVILVGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGENREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGFNGVMQMLGGRQNQGGQGMGAPMGGQQQQGGWGQPQQPAAQNFAPQQQQQQAPA
QQPAPQQQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGENREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGFNGVMQMLGGRQNQGGQGMGAPMGGQQQQGGWGQPQQPAAQNFAPQQQQQQAPA
QQPAPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=492543 IL982_RS00390 WP_044174221.1 45369..45917(+) (ssb) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTAGTGGGTAACCTAGGAAATGATCCTGAAGTTCGTTACATGCCAAATGG
CGGTGCGGTTGCAAACATTACTATTGCAACTTCAGAAACTTGGCGTGATAAAGCAACCGGCGAAAATCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTTGGCAAATTAGCCGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTATACATT
GAGGGTCAGCTACAAACTCGTAAGTGGCAGAACCAACAGGGCCAAGATCAGTACACTACAGAAATCGTAGTACAAGGCTT
TAACGGCGTTATGCAAATGTTGGGTGGCCGTCAAAACCAAGGTGGTCAAGGTATGGGCGCTCCTATGGGCGGTCAACAGC
AGCAAGGCGGTTGGGGTCAACCACAACAGCCTGCAGCACAAAACTTTGCTCCACAACAACAGCAGCAACAAGCTCCAGCT
CAACAACCTGCACCTCAGCAGCAGTACAATGAGCCACCAATGGACTTCGACGACGATATTCCATTCTAA
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTAGTGGGTAACCTAGGAAATGATCCTGAAGTTCGTTACATGCCAAATGG
CGGTGCGGTTGCAAACATTACTATTGCAACTTCAGAAACTTGGCGTGATAAAGCAACCGGCGAAAATCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTTGGCAAATTAGCCGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTATACATT
GAGGGTCAGCTACAAACTCGTAAGTGGCAGAACCAACAGGGCCAAGATCAGTACACTACAGAAATCGTAGTACAAGGCTT
TAACGGCGTTATGCAAATGTTGGGTGGCCGTCAAAACCAAGGTGGTCAAGGTATGGGCGCTCCTATGGGCGGTCAACAGC
AGCAAGGCGGTTGGGGTCAACCACAACAGCCTGCAGCACAAAACTTTGCTCCACAACAACAGCAGCAACAAGCTCCAGCT
CAACAACCTGCACCTCAGCAGCAGTACAATGAGCCACCAATGGACTTCGACGACGATATTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
77.473 |
100 |
0.775 |
| ssb | Glaesserella parasuis strain SC1401 |
57.527 |
100 |
0.588 |
| ssb | Neisseria meningitidis MC58 |
46.739 |
100 |
0.473 |
| ssb | Neisseria gonorrhoeae MS11 |
46.739 |
100 |
0.473 |