Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   IL989_RS16365 Genome accession   NZ_CP062984
Coordinates   3314141..3315304 (-) Length   387 a.a.
NCBI ID   WP_013353787.1    Uniprot ID   A0A9P1JKJ4
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309141..3320304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS16335 (IL989_16335) - 3309407..3309826 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  IL989_RS16340 (IL989_16340) comFC 3309900..3310589 (-) 690 WP_404978239.1 double zinc ribbon domain-containing protein Machinery gene
  IL989_RS16345 (IL989_16345) - 3310595..3310879 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  IL989_RS16350 (IL989_16350) comFA 3310938..3312323 (-) 1386 WP_193350895.1 DEAD/DEAH box helicase Machinery gene
  IL989_RS16355 (IL989_16355) - 3312430..3313278 (-) 849 WP_193350896.1 DegV family protein -
  IL989_RS16360 (IL989_16360) degU 3313375..3314064 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IL989_RS16365 (IL989_16365) degS 3314141..3315304 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  IL989_RS16370 (IL989_16370) - 3315527..3316174 (+) 648 WP_065982455.1 YigZ family protein -
  IL989_RS16375 (IL989_16375) - 3316179..3317399 (+) 1221 WP_193350897.1 LCP family protein -
  IL989_RS16380 (IL989_16380) - 3317499..3318575 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -
  IL989_RS16385 (IL989_16385) tuaH 3318708..3319904 (-) 1197 WP_193350898.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45028.85 Da        Isoelectric Point: 7.1379

>NTDB_id=492280 IL989_RS16365 WP_013353787.1 3314141..3315304(-) (degS) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=492280 IL989_RS16365 WP_013353787.1 3314141..3315304(-) (degS) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTTAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTACATACCCGGCACGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGACTCCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTTGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTGGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCAGCTCAAATGCTGGCAAATGTCATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATAGGAGACACGGAGAACAAAAGGCTTGCCCCACAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACAATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.325

99.483

0.948