Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IL989_RS16350 Genome accession   NZ_CP062984
Coordinates   3310938..3312323 (-) Length   461 a.a.
NCBI ID   WP_193350895.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3305938..3317323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS16315 (IL989_16315) flgL 3306112..3307029 (-) 918 WP_013353778.1 flagellar hook-associated protein FlgL -
  IL989_RS16320 (IL989_16320) flgK 3307041..3308558 (-) 1518 WP_193350893.1 flagellar hook-associated protein FlgK -
  IL989_RS16325 (IL989_16325) - 3308574..3309056 (-) 483 WP_065522335.1 flagellar protein FlgN -
  IL989_RS16330 (IL989_16330) flgM 3309071..3309337 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  IL989_RS16335 (IL989_16335) - 3309407..3309826 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  IL989_RS16340 (IL989_16340) comFC 3309900..3310589 (-) 690 WP_404978239.1 double zinc ribbon domain-containing protein Machinery gene
  IL989_RS16345 (IL989_16345) - 3310595..3310879 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  IL989_RS16350 (IL989_16350) comFA 3310938..3312323 (-) 1386 WP_193350895.1 DEAD/DEAH box helicase Machinery gene
  IL989_RS16355 (IL989_16355) - 3312430..3313278 (-) 849 WP_193350896.1 DegV family protein -
  IL989_RS16360 (IL989_16360) degU 3313375..3314064 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IL989_RS16365 (IL989_16365) degS 3314141..3315304 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  IL989_RS16370 (IL989_16370) - 3315527..3316174 (+) 648 WP_065982455.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52731.24 Da        Isoelectric Point: 10.0220

>NTDB_id=492278 IL989_RS16350 WP_193350895.1 3310938..3312323(-) (comFA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MSGGASEFSKVRDFFYGRHLLRSEIPFSDQCIKRFIEEEYIMAEPSVIRRKNRYVCRRCGQSDQARFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNQAAENSWEPIKLSWEGTLTDGQKQAADALIEVIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEADLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
QQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRVDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=492278 IL989_RS16350 WP_193350895.1 3310938..3312323(-) (comFA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGTCCGGAGGTGCTTCAGAATTTTCGAAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAACGTTTTATAGAAGAAGAATATATAATGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGTCTGACCAAGCCCGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAGCTGACGTCATTATACTCTTGGAATCAAGCGGCTGAAAACAG
CTGGGAGCCTATCAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCGGATGCACTTATAGAAGTGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTTCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGTGAGGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGATTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
CAGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAGAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGATTCAGAGAGG
GACGGGTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.363

99.132

0.618