Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IL989_RS16360 Genome accession   NZ_CP062984
Coordinates   3313375..3314064 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3308375..3319064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS16325 (IL989_16325) - 3308574..3309056 (-) 483 WP_065522335.1 flagellar protein FlgN -
  IL989_RS16330 (IL989_16330) flgM 3309071..3309337 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  IL989_RS16335 (IL989_16335) - 3309407..3309826 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  IL989_RS16340 (IL989_16340) comFC 3309900..3310589 (-) 690 WP_404978239.1 double zinc ribbon domain-containing protein Machinery gene
  IL989_RS16345 (IL989_16345) - 3310595..3310879 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  IL989_RS16350 (IL989_16350) comFA 3310938..3312323 (-) 1386 WP_193350895.1 DEAD/DEAH box helicase Machinery gene
  IL989_RS16355 (IL989_16355) - 3312430..3313278 (-) 849 WP_193350896.1 DegV family protein -
  IL989_RS16360 (IL989_16360) degU 3313375..3314064 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IL989_RS16365 (IL989_16365) degS 3314141..3315304 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  IL989_RS16370 (IL989_16370) - 3315527..3316174 (+) 648 WP_065982455.1 YigZ family protein -
  IL989_RS16375 (IL989_16375) - 3316179..3317399 (+) 1221 WP_193350897.1 LCP family protein -
  IL989_RS16380 (IL989_16380) - 3317499..3318575 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=492279 IL989_RS16360 WP_003219701.1 3313375..3314064(-) (degU) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=492279 IL989_RS16360 WP_003219701.1 3313375..3314064(-) (degU) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTTCTGAAAGA
GATGGACGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1