Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IL989_RS16340 Genome accession   NZ_CP062984
Coordinates   3309900..3310589 (-) Length   229 a.a.
NCBI ID   WP_404978239.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3304900..3315589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS16305 (IL989_16305) fliW 3304990..3305421 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  IL989_RS16310 (IL989_16310) - 3305451..3306020 (-) 570 WP_193350892.1 DUF6470 family protein -
  IL989_RS16315 (IL989_16315) flgL 3306112..3307029 (-) 918 WP_013353778.1 flagellar hook-associated protein FlgL -
  IL989_RS16320 (IL989_16320) flgK 3307041..3308558 (-) 1518 WP_193350893.1 flagellar hook-associated protein FlgK -
  IL989_RS16325 (IL989_16325) - 3308574..3309056 (-) 483 WP_065522335.1 flagellar protein FlgN -
  IL989_RS16330 (IL989_16330) flgM 3309071..3309337 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  IL989_RS16335 (IL989_16335) - 3309407..3309826 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  IL989_RS16340 (IL989_16340) comFC 3309900..3310589 (-) 690 WP_404978239.1 double zinc ribbon domain-containing protein Machinery gene
  IL989_RS16345 (IL989_16345) - 3310595..3310879 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  IL989_RS16350 (IL989_16350) comFA 3310938..3312323 (-) 1386 WP_193350895.1 DEAD/DEAH box helicase Machinery gene
  IL989_RS16355 (IL989_16355) - 3312430..3313278 (-) 849 WP_193350896.1 DegV family protein -
  IL989_RS16360 (IL989_16360) degU 3313375..3314064 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IL989_RS16365 (IL989_16365) degS 3314141..3315304 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25394.10 Da        Isoelectric Point: 8.0784

>NTDB_id=492277 IL989_RS16340 WP_404978239.1 3309900..3310589(-) (comFC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MNCLLCDSPISRSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNEKCADCMARESKTEERFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=492277 IL989_RS16340 WP_404978239.1 3309900..3310589(-) (comFC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
CTGAATTGTTTATTGTGTGACTCCCCAATTTCAAGATCACTGACTTGGAGATCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATTGAAGGCCCAGTATGCAGTTTATGCGGAAGACCTCAGCAGTCAA
ACGAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAAGAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTAT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGTCCCGAACGGC
TGGCGGAGCGCGGATTCAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCAAAAAAGAGCAAAACAGAAAGACTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGAAGCTCTGCTGA
CAGCAGGCAAAGCATTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

61.233

99.127

0.607