Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IL989_RS05110 Genome accession   NZ_CP062984
Coordinates   1013325..1013903 (+) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1008325..1018903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS19330 - 1008827..1009342 (-) 516 WP_373418731.1 methyl-accepting chemotaxis protein -
  IL989_RS19335 - 1009586..1010119 (-) 534 Protein_948 protoglobin domain-containing protein -
  IL989_RS05095 (IL989_05095) - 1010242..1011765 (-) 1524 WP_193351538.1 FAD-dependent oxidoreductase -
  IL989_RS05100 (IL989_05100) - 1011889..1012746 (+) 858 WP_013351742.1 SDR family oxidoreductase -
  IL989_RS05105 (IL989_05105) - 1012776..1013009 (-) 234 WP_013351743.1 IDEAL domain-containing protein -
  IL989_RS05110 (IL989_05110) comK 1013325..1013903 (+) 579 WP_013351744.1 competence protein ComK Regulator
  IL989_RS05115 (IL989_05115) - 1014050..1014421 (+) 372 WP_193351539.1 iron chaperone -
  IL989_RS05120 (IL989_05120) eis 1014456..1015667 (-) 1212 WP_193351540.1 enhanced intracellular survival protein Eis -
  IL989_RS05125 (IL989_05125) - 1015823..1016533 (-) 711 WP_125122343.1 YrpD family protein -
  IL989_RS05130 (IL989_05130) - 1016729..1016998 (+) 270 WP_013351748.1 excalibur calcium-binding domain-containing protein -
  IL989_RS05135 (IL989_05135) - 1017028..1017345 (-) 318 WP_003155166.1 YbjQ family protein -
  IL989_RS05140 (IL989_05140) - 1017387..1018856 (-) 1470 WP_193351541.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=492230 IL989_RS05110 WP_013351744.1 1013325..1013903(+) (comK) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=492230 IL989_RS05110 WP_013351744.1 1013325..1013903(+) (comK) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCACGGCCTCAATGCGGCTGGATATCTCA
CGTGCACGTTAAAGATTTTCAGCCGACCGCATTTGATGACACGGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTTTACAGAACTGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTATACCCGAAAGAAGAGCGGACAAAAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828