Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H4O27_RS07430 Genome accession   NZ_CP062976
Coordinates   1523240..1523791 (-) Length   183 a.a.
NCBI ID   WP_165008853.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1518240..1528791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS07400 - 1518296..1518727 (-) 432 WP_165008846.1 type II toxin-antitoxin system RatA family toxin -
  H4O27_RS07405 ftsH 1518889..1520868 (-) 1980 WP_226883379.1 ATP-dependent zinc metalloprotease FtsH -
  H4O27_RS07410 - 1520934..1521554 (-) 621 WP_165008849.1 RlmE family RNA methyltransferase -
  H4O27_RS07415 yhbY 1521668..1521952 (+) 285 WP_100563177.1 ribosome assembly RNA-binding protein YhbY -
  H4O27_RS07420 - 1522027..1522470 (-) 444 WP_165008851.1 DUF4149 domain-containing protein -
  H4O27_RS07425 greA 1522487..1522963 (-) 477 WP_095503589.1 transcription elongation factor GreA -
  H4O27_RS07430 ssb 1523240..1523791 (-) 552 WP_165008853.1 single-stranded DNA-binding protein Machinery gene
  H4O27_RS07435 - 1523793..1525175 (-) 1383 WP_165008948.1 MFS transporter -
  H4O27_RS07440 - 1525311..1525943 (-) 633 WP_165008855.1 lytic transglycosylase domain-containing protein -
  H4O27_RS07445 ppx 1526158..1527666 (+) 1509 WP_165008857.1 exopolyphosphatase -
  H4O27_RS07450 - 1527907..1528341 (-) 435 WP_165008859.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20294.35 Da        Isoelectric Point: 5.2944

>NTDB_id=492184 H4O27_RS07430 WP_165008853.1 1523240..1523791(-) (ssb) [Neisseria yangbaofengii strain ZJ785]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRQERTEWHNITMYRRLAEIAGQYLRKGGQVYLEGRI
QSRKYQGKDGIERTAYDIIASEMKMLGGRNDNSGGTPYDDGGYDQSGYQGSQGGYQQSAPQQPYQSAPAHQQEAPNAPPA
APVRRVPTAPAAPVDDIDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=492184 H4O27_RS07430 WP_165008853.1 1523240..1523791(-) (ssb) [Neisseria yangbaofengii strain ZJ785]
ATGTCATTGAATAAAGTCATCCTTATCGGCCGCTTGGGTCGAGATCCGGAAGTCCGTTACATGCCCAACGGCGAAGCGGT
GTGTAACTTCAGCGTGGCTACCAGCGAAACATGGAACGACCGCAACGGCCAACGCCAAGAGCGTACCGAGTGGCACAACA
TCACCATGTACCGCCGTTTGGCCGAAATCGCCGGCCAATATCTGCGCAAAGGCGGCCAAGTGTATTTGGAAGGCCGTATT
CAAAGCCGTAAATACCAGGGTAAAGACGGCATCGAGCGCACTGCTTACGACATCATCGCCAGCGAAATGAAAATGCTCGG
CGGCCGCAACGATAATTCAGGCGGCACACCTTATGATGACGGCGGCTATGACCAAAGTGGTTATCAAGGTTCGCAAGGCG
GCTACCAACAATCGGCACCGCAGCAACCTTACCAATCTGCTCCGGCTCATCAGCAAGAAGCACCAAACGCGCCGCCGGCC
GCACCTGTTCGCCGCGTACCAACCGCTCCGGCTGCCCCGGTTGACGATATTGATGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

78.378

100

0.792
  ssb Neisseria meningitidis MC58

77.838

100

0.787
  ssb Vibrio cholerae strain A1552

48.148

100

0.497
  ssb Glaesserella parasuis strain SC1401

44.565

100

0.448